Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq34 109 4e-19 seq251 96.9 3e-15 seq300 95.1 1e-14 seq143 93.3 3e-14 seq32 87.8 1e-12 seq2 87.8 1e-12 seq53 84.2 2e-11 >seq34 Length=3699824 Score = 109 bits (120), Expect = 4e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||||||| || || |||||||||||||||||||| || | | Sbjct 904588 CCACCACGCAGACGAAGCACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTC-GGC 904646 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||| || ||||||||||| | |||||||||| || Sbjct 904647 AAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGG 904706 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||||||||| |||||| Sbjct 904707 GATGCCTTCTTTGTCCTGAATTTT 904730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||||||||| || || |||||||||||||| || ||||| || | ||| || || Sbjct 904825 AGACGCAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTC-GGCAAGGGTACG 904883 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||||||||| || ||||| ||||| | |||||| ||| || | | || Sbjct 904884 GCCGTCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGGGGAATACCTTC 904943 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| |||||| ||| | | | | | |||| | | || ||| | || Sbjct 904944 CTTGTCCTGAATTTTGGCCTTCACGTTATCGATAGTATCCGAACTCTCAACTTCAAGAGT 905003 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || ||||| ||||| ||||| Sbjct 905004 GATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 905042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||| ||||||||| || |||||||||||||| || ||||| || | ||| || || Sbjct 905053 AGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTC-GGCAAGGGTACG 905111 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| ||||| ||||| || ||||| ||||| | |||||| || Sbjct 905112 GCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTC 905156 >seq251 Length=123057 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||||||||| || || |||||||||||| |||||||||| ||| || || Sbjct 98291 AGTCGGAGCACCAGATGCAGAGTAGACTCCTTCTGAATATTGTAATCTG-CAAGGGTGCG 98349 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| ||||| || || |||||||||||| || | || ||| Sbjct 98350 GCCGTCTTCGAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTC 98409 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 || || || || ||| | | | | |||||| || || |||| || Sbjct 98410 CTTATCTTGGATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCAACCTCGAGGGT 98469 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| || ||||| || || ||||| ||||| |||||| Sbjct 98470 GATTGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATT 98509 >seq300 Length=293291 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||||||| || || ||||||||| ||||||||||||| ||| || || Sbjct 10497 AGACGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAATCTG-CAAGGGTGCG 10555 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || ||||| | |||||||||| || | | ||| Sbjct 10556 GCCGTCTTCGAGCTGCTTGCCCGCGAAAATCAGCCTCTGCTGATCCGGGGGAATTCCCTC 10615 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| ||| || | | | | |||||| ||||| || | ||| Sbjct 10616 CTTGTCCTGAATCTTTGCTTTGACGTTATCAATTGTATCAGATGATTCAACCTCCAGCGT 10675 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || ||||| || || || || ||||| ||||| Sbjct 10676 GATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 10714 >seq143 Length=574977 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||||||||| || || ||||||||| || |||||||||| ||| || || Sbjct 165592 AGTCGGAGCACCAGATGCAGAGTAGACTCCTTCTGGATATTGTAATCTG-CAAGGGTGCG 165650 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| ||||| || || |||||||||||| || | || ||| Sbjct 165651 GCCGTCTTCGAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTC 165710 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 || || || || ||| | | | | |||||| || ||| |||| || Sbjct 165711 CTTATCTTGGATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCGACCTCGAGGGT 165770 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || || || || || || ||||||||||| |||||| Sbjct 165771 GATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCATT 165810 >seq32 Length=1954954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||| || || ||||| || ||||||||| ||||||||||| | | Sbjct 590066 CCTCCCCTCAGCCTCAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC-GGC 590124 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | ||||| ||||| || || || | |||||||||| || Sbjct 590125 AAGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 590184 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGC 34078 | || ||| |||||| || || ||| | | ||| | | || | || || Sbjct 590185 AATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCAATCGTGTCTGATGACTCAA 590243 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || |||||||||||||| Sbjct 590244 CCTCGAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACAAAGATTTGCAT 590292 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||| || || ||||| || ||||||||| ||||||||||| | | Sbjct 590294 CCTCCCCTCAGCCTCAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG-C 590352 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | ||||| ||||| || || || | |||||||||| || Sbjct 590353 AAGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 590412 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 590413 AATGCCCTCCTTGTCC 590428 >seq2 Length=5918456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||||||||||||||||||||||| || || | | | Sbjct 561450 AGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCGAGGGTCCTC 561391 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || ||||| | |||||| ||| || | | ||| Sbjct 561390 CCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGGATACCCTCC 561331 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| ||| || ||| | | | | | | || | ||| ||| |||| || Sbjct 561330 TTGTCCTGAATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCGACCTCGAGGGTA 561271 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || || || || || ||||| Sbjct 561270 ATAGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 561233 >seq53 Length=1478458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||||||||| |||||||||||||| |||||||| || || Sbjct 998115 CCGCCACGCAGACGAAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCG 998056 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||| || ||||| || || | |||||| || || Sbjct 998055 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 997996 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | | || |||||| |||||| |||| | | |||||| || | || Sbjct 997995 ATCCCTTCCTTGTCCTGAATTTTAGCTTTAACATTATCGATCGTATCAG-AGCTCTCCAC 997937 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || |||||||| || || |||||||| || ||||| Sbjct 997936 CTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058064078592