Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq8 138 1e-27 seq4 113 5e-20 seq27 107 2e-18 seq59 104 3e-17 seq2 104 3e-17 >seq8 Length=3569224 Score = 138 bits (152), Expect = 1e-27 Identities = 305/450 (68%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || || || ||| || || ||| ||||| || || || Sbjct 616287 TCAAAGCGTCCAGGCCTCAGCAGTGCAGAGTCGAGAATGTCAGCACGGTTAGTAGCTGCA 616346 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || || | ||||||||| | |||||||||||||| |||||||| |||||||| | | Sbjct 616347 ATTACTATGATGCCCGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGTTGATTAAGG 616406 Query 10910 GTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGG 10967 || ||||| ||||||||||| | | || | |||| | | ||| | || || | Sbjct 616407 GTCTGTTCCCGTTCATCATTTCCTCCTCCAATC--CCCGTTCCTCTTTGTCTTCCAACAG 616464 Query 10968 CGTCAATTTCATCGATGAAAACGATACAC-GGTTGATTTTCACGGGCAACTTCAAAGATA 11026 | || || ||||| | ||| || || ||| || | | | | || | ||| ||| | | Sbjct 616465 CATCGATCTCATCAACGAACACAATGCACGGGGCGTTCTCCTTGGCCTTCTTGAAA-AGA 616523 Query 11027 TCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACAT 11086 || || |||| | ||||| ||||| ||||||||||| ||||| | | ||||| || Sbjct 616524 TCACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCGGAA-AT 616582 Query 11087 TG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 11145 | || || || ||| || ||||||||||| || ||| || | |||||||| || Sbjct 616583 CGAGAAAAATGGAACGCCGGCCTCACCCGCGATCGCCTTGGCTAGCAAAGTCTTCCCAGT 616642 Query 11146 CCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCG 11205 ||||| ||| ||||| |||| ||||| | ||||| | | | | | Sbjct 616643 TCCAGGAGGGCCTATAAGAAGAACACCTTTCGGGATGCGTGCACCTACTGCGGTGAATCT 616702 Query 11206 CTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 ||| |||| ||| ||||| || |||| ||| Sbjct 616703 CTCGGGTTTTTTCAGGAACTCAACGACTTC 616732 >seq4 Length=5414181 Score = 113 bits (124), Expect = 5e-20 Identities = 297/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || | || |||||| || ||| ||||| || || || Sbjct 2885463 TCAAAGCGTCCCGGCCTCAGCAATGCAGAGTCAAGAATGTCAGCACGGTTAGTAGCTGCA 2885522 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || || | || ||||| | || ||||||||||| |||||||| |||||||| | | Sbjct 2885523 ATTACTATGACACCCGTATTTCCTTCGAAGCCATCCATTTCAGTCAAAAGTTGATTAAGG 2885582 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 10967 || ||||| | ||||||||| | | | | | || || | | ||| | || || | Sbjct 2885583 GTCTGTTCCCTTTCATCATTTCC--TCCTCCGATCCCTGCTCCTCTTTGTCTTCCAACAG 2885640 Query 10968 CGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATAT 11027 | ||||| ||||| | || || || || || ||| || ||| | ||| | || Sbjct 2885641 CATCAATCTCATCAACAAACACAATGCAGGGGGCATTCTCCTTGGCTTTCTTAAAAAGAT 2885700 Query 11028 CTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATT 11087 | || |||| | ||||| ||||| ||||||||||| ||||| | | | ||| || Sbjct 2885701 CACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCTGAA-ATC 2885759 Query 11088 G-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 11146 | || ||||| || || || || ||||| || ||| || | ||||||||| || Sbjct 2885760 GAGAAAAAGGGAACACCGGCCTCGCCGGCGATTGCCTTGGCAAGCAAGGTCTTCCCAGTA 2885819 Query 11147 CCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGC 11206 || || ||| ||||| |||| ||||||| |||||| | || | | | | Sbjct 2885820 CCCGGAGGGCCTATAAGAAGAACACCTTTCGGGATCCGTGCACCAACTGCAGTGAACCTC 2885879 Query 11207 TCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 || |||| || | ||| ||||| | ||| Sbjct 2885880 TCTGGTTTCTTCAAGAACTCCACAACTTC 2885908 >seq27 Length=2003651 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || || || ||||| || || || || || ||||| ||||| Sbjct 1228670 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGGGCATAAGACC 1228729 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || || |||| |||||| |||||||| || || || ||||||||||| || || || || Sbjct 1228730 ACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCA 1228789 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCAAACCACTTCATCG 126236 || ||||| | ||| || || || || || || | | || |||| |||| || || Sbjct 1228790 AGCAAACGCGACGAGGCGTTCTGCGAATGA-AGCTTCGTCTGATTCAATCCACCGCAGCG 1228848 Query 126237 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||||| || || | | ||| ||||| || | |||||| Sbjct 1228849 CCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCGC 1228891 >seq59 Length=1347071 Score = 104 bits (114), Expect = 3e-17 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || || || |||||||| || || || || ||||| || || Sbjct 1070966 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCC 1071025 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || || |||| ||| || ||||| || || || || ||||||||||| || ||||| || Sbjct 1071026 GCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCA 1071085 Query 126178 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAACCACTTCATCG 126236 || || || | |||||| || || |||| || || | |||| ||||| | || Sbjct 1071086 AGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCAC-ACGATTCAATCCACTCGAGCG 1071144 Query 126237 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCT 126293 |||||| || || ||| ||||||||| || | |||||| |||| || ||| Sbjct 1071145 CCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCT 1071204 Query 126294 TCTTTTCTGATGGATCTTTGATGTACTTATCTA 126326 ||| || || |||||||| || | |||| Sbjct 1071205 TCTCGTCGGA---GTCTTTGATATAAGTTTCTA 1071234 >seq2 Length=5918456 Score = 104 bits (114), Expect = 3e-17 Identities = 185/265 (70%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| || || || |||||||| || | | || || ||||| || || || || | Sbjct 905390 CCTCGTCGCGAGAAATTAGTTCATTGGAAATGTG-AGGCCGGGCATAAGCCCGCGTTTTT 905332 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| ||| || ||||| || || || || ||||||||||| || ||||| || || || | Sbjct 905331 TCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAG 905272 Query 126186 CAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 | | |||||| || || |||| || || | |||| ||||| | |||||||| Sbjct 905271 CGACGAGACGATCCGCGAAAGAAGAATCAC-ACGATTCAATCCACTCGAGCGCCCACTTG 905213 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTTCTTTTCT 126301 || || ||| ||||||||| || | |||||| |||| || |||||| || Sbjct 905212 GCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCGTCG 905153 Query 126302 GATGGATCTTTGATGTACTTATCTA 126326 || ||||||||| || | |||| Sbjct 905152 GA---ATCTTTGATATAAGTTTCTA 905131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597346909639680