Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq32 100 3e-16 seq300 93.3 4e-14 seq2 86.0 6e-12 seq34 84.2 2e-11 >seq32 Length=1954954 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | ||||| ||| || || ||||| |||| | Sbjct 589871 GACTCCTTTTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGTTTGCCGGCA 589930 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || |||||||| ||||| || ||||| ||| || |||| Sbjct 589931 AAGATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTTACG 589990 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | ||||| ||||| | || | ||| || ||||| || || || Sbjct 589991 TTGTCAATCGTATCTGAAGACTCAACCTCCAAGGTGATCGTCTTCCCAGTGAGTGTCTTG 590050 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| || |||||| || Sbjct 590051 ACAAAGATTTGCATGCCT 590068 >seq300 Length=293291 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||| || ||||| |||| | Sbjct 11205 GACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCA 11264 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||| ||||| ||||| || || || || || ||| ||| |||| | Sbjct 11265 AAGATCAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACA 11324 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||||| || | ||| || || || || || || Sbjct 11325 TTG-TCGATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCTGTGAGGGTCTT 11383 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 11384 CACGAAGATCTGCAT 11398 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||| | ||| | ||| | | | || ||||| || |||||||||||| | || || Sbjct 10955 ACGGAGAACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 11014 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||| || || || |||| | |||| || | ||| ||||||||||| || ||||| || Sbjct 11015 ATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTT 11074 Query 138519 GTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 ||| ||| || ||| | |||| || | || || | ||||||||||| | || | Sbjct 11075 GTCCTGGATCTTGGCTTTAACATTG-TCGATTGTATCTGAGGACTCCACCTCAAGGGTGA 11133 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || || || || || || || || ||||||||| || Sbjct 11134 TGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGCCT 11174 >seq2 Length=5918456 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | || | | ||||||||| || || || | | Sbjct 561424 CTCCTTCTGAATGTTGTAGTCAGCGAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAA 561365 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATT 138541 || || | ||| ||||||||||| ||||| || ||||| ||| | || | || | | Sbjct 561364 AATCAGCCTCTGCTGGTCCGGAGGGATACCCTCCTTGTC-CTGAATCTTCGCCTTCACGT 561306 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | ||||||| ||||| ||||||| || | || || || || || || || | Sbjct 561305 TATCGATAGTGTCGGAAGACTCGACCTCGAGGGTAATAGTCTTCCCGGTGAGGGTCTTGA 561246 Query 138602 CAAAAATCTGCATG 138615 | |||||||||||| Sbjct 561245 CGAAAATCTGCATG 561232 >seq34 Length=3699824 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || | ||||| ||| || | ||||| || | Sbjct 905305 GACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCGTCTTCCAACTGTTTCCCAGCG 905364 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | || ||||||||||| || || || ||||| ||||||| |||| | Sbjct 905365 AAGATGAGCCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATTTTTGCCTTTACA 905424 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| || ||||||| || | || || || || |||||||| Sbjct 905425 TTG-TCGATCGTGTCGGAGCTTTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTT 905483 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 905484 GACAAAGATCTGCAT 905498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256841861120