Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq53 102 6e-17
seq34 93.3 3e-14
seq2 89.7 4e-13
>seq53
Length=1478458
Score = 102 bits (112), Expect = 6e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||| || | || || || | |||||| ||||| || || || ||||||||||| |||
Sbjct 997431 CCACCGCGAAGTCGTAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 997372
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| |||| | || || | || || || ||| | || | | || ||||| ||
Sbjct 997371 -AGGGTTCTGCCATCCTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGGAGG 997313
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||| |||||||| ||| || ||||||| | || ||||| || | || ||
Sbjct 997312 AATTCCCTCCTTGTCCTGAATCTTAGCTTTTACATTGTCAATAGTGTCAGAGCTCTCGAC 997253
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| ||||| || |||||||||||||| || || ||||||||
Sbjct 997252 CTCGAGGGTGATGGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCAT 997205
>seq34
Length=3699824
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | || | || | ||||| ||||| || || || |||||||||||
Sbjct 905270 TGCCACCGCGAAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAG 905329
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | | ||||||| || ||||| |||||| | || | | || ||||| |
Sbjct 905330 CAAGGGTACGACCGTCTTCCAACTGTTTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGAG 905389
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||||||| |||||||| ||||| |||||| | || || || ||| |||| |
Sbjct 905390 GAATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCGATCGTGTCGGAGCTTTCGA 905449
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || ||||| || || || |||||||| ||||| || |||||
Sbjct 905450 CCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTTGACAAAGATCTGCAT 905498
>seq2
Length=5918456
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || || ||||| || || || |||||||||||| ||| ||||| |||| ||
Sbjct 561213 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCG 561154
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || ||||||||| | |||| | ||| || || ||| ||||| |||||||| |
Sbjct 561153 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 561094
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| |||||| | || || || || ||| || || | ||| ||||| ||
Sbjct 561093 ATCTTGGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTTG 561034
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||| || |||||
Sbjct 561033 CCAGTGAGGGTCTTGACAAAGATCTGCAT 561005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357388097279360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |