Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq53 102 6e-17 seq34 93.3 3e-14 seq2 89.7 4e-13 >seq53 Length=1478458 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || || || | |||||| ||||| || || || ||||||||||| ||| Sbjct 997431 CCACCGCGAAGTCGTAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 997372 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| | || || | || || || ||| | || | | || ||||| || Sbjct 997371 -AGGGTTCTGCCATCCTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGGAGG 997313 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||| |||||||| ||| || ||||||| | || ||||| || | || || Sbjct 997312 AATTCCCTCCTTGTCCTGAATCTTAGCTTTTACATTGTCAATAGTGTCAGAGCTCTCGAC 997253 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || |||||||||||||| || || |||||||| Sbjct 997252 CTCGAGGGTGATGGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCAT 997205 >seq34 Length=3699824 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | ||||| ||||| || || || ||||||||||| Sbjct 905270 TGCCACCGCGAAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAG 905329 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | ||||||| || ||||| |||||| | || | | || ||||| | Sbjct 905330 CAAGGGTACGACCGTCTTCCAACTGTTTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGAG 905389 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| |||||||| ||||| |||||| | || || || ||| |||| | Sbjct 905390 GAATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCGATCGTGTCGGAGCTTTCGA 905449 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 905450 CCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTTGACAAAGATCTGCAT 905498 >seq2 Length=5918456 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || |||||||||||| ||| ||||| |||| || Sbjct 561213 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCG 561154 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | |||| | ||| || || ||| ||||| |||||||| | Sbjct 561153 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 561094 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| |||||| | || || || || ||| || || | ||| ||||| || Sbjct 561093 ATCTTGGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTTG 561034 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || ||||| Sbjct 561033 CCAGTGAGGGTCTTGACAAAGATCTGCAT 561005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388097279360