Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq34 114 1e-20 seq32 93.3 4e-14 seq143 89.7 5e-13 seq300 87.8 2e-12 >seq2 Length=5918456 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| || || || ||||||||||||||||| ||||| ||| Sbjct 561918 ATACCCCCGCGGAGGCGGAGCACCAGGTGGAGGGTTGATTCCTTTTGGATGTTATAGTCG 561859 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || || ||||| | ||||| || ||||| ||||| Sbjct 561858 GCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAAATCAACCGCTGCTGATCCGGG 561799 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||||||||||||||| Sbjct 561798 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCGGAAGACTC 561740 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| || || || || ||||||||||| Sbjct 561739 AACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTGCAT 561689 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| || || || || |||||||| ||||| || || || Sbjct 561690 ATACCCCCGCGAAGGCGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 561631 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || || ||||| | ||||| || ||||| ||||| Sbjct 561630 GCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAAATCAACCGCTGCTGATCCGGG 561571 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || || | || | || | |||||||||||||| Sbjct 561570 GGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTATCGATAGTGTCGGAAGACTC 561512 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||| || || || || || || || || ||||| ||||| Sbjct 561511 GACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 561461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || |||||||| | | ||| || || || || |||||||| |||||||| || || ||| Sbjct 562143 CCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCTGCT 562084 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || ||| || | || || || || |||| | | ||||||||||| || Sbjct 562083 -AGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGGTCCGGGGG 562025 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| || || || || | || | || ||||| || || || Sbjct 562024 GATACCCTCCTTATCCTGTATCTTCGCCTTCACATTGTCGATCGTATCGGACGATTCAAC 561965 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| || |||||||| || || || |||||||||||||| Sbjct 561964 CTCTAGAGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 561917 >seq34 Length=3699824 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || ||| || || || || || ||||| ||||| || ||||| Sbjct 905269 ATGCCACCGCGAAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCA 905328 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||| ||||| || ||| | || | | |||||||||||| Sbjct 905329 GCAAGGGTACGACCGTCTTCCAACTGTTTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGA 905388 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || ||||| |||||| || | || | |||||||| ||| Sbjct 905389 GGAATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCGATCGTGTCGGAGCTTTCG 905448 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | || || |||||||||||||| ||||| || |||||| Sbjct 905449 ACCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTTGACAAAGATCTGCATC 905499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | || ||| || || || || ||||| |||||||| || ||| Sbjct 904813 ATACCACCGCGGAGACGCAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCG 904872 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||| || || || | |||| | ||||||||||| Sbjct 904873 GCAAGGGTACGGCCGTCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGG 904932 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || |||||||| || | || | || | || || ||| ||| Sbjct 904933 GGAATACCTTCCTTGTCCTGAATTTTGGCCTTCA-CGTTATCGATAGTATCCGAACTCTC 904991 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| ||||| | ||| ||||| || || || || || || || ||||| ||| || Sbjct 904992 AACTTCAAGAGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCATACCGCCAC 905050 >seq32 Length=1954954 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | ||| | |||||| || || || || ||||||||||| || ||| Sbjct 589610 CCACCACGGAGGCGGAGCACCAAATGCAGGGTGGACTCTTTCTGGATATTATAGTCCGCT 589669 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| |||| || || || || | || | | ||||||||||| || Sbjct 589670 -AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGG 589728 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 |||||| || || || || || ||| || | |||| ||||| || ||||| || Sbjct 589729 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCTATAGTGTCTGAGGACTCCAC 589788 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | ||| ||||| || || || || ||||| |||||||| Sbjct 589789 CTCCAGAGTGATCGTCTTGCCCGTGAGTGTCTTAACAAAGATTTGCAT 589836 >seq143 Length=574977 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || || || ||||| |||||||| ||||| |||||||| || || Sbjct 166051 CTCAAAACGAGGTGAAGCGTGGATTCCTTCTGGATGTTATAATCAGCGAGCGTGCGGCCG 166110 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | || || || ||| | || | | ||||| || || || ||||| || || Sbjct 166111 TCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTG 166170 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | ||| || || |||||||| ||||| || | Sbjct 166171 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCCGAGGACTCGACCTCGAGGGTGAT 166229 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||||||| || || || || ||||| Sbjct 166230 GGTCTTGCCGGTTAGAGTCTTGACGAAGATCTGCAT 166265 >seq300 Length=293291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | | |||||| || || || || || || ||||| |||||||| || ||| Sbjct 11397 ATACCTCCCCTCAACCTCAAAACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCG 11456 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || ||| | ||||||| ||||||||||| Sbjct 11457 GCAAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGG 11516 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || | | |||| | | || | || | |||||| || ||||| Sbjct 11517 GGGATTCCCTCCTTGTCCTGGA-TCTTTGCCTTAACGTTGTCAATGGTGTCCGAGGACTC 11575 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || | ||| || || || || || || || || || |||||| Sbjct 11576 GACCTCAAGGGTGATCGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCATC 11627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998137564160