Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8 120 4e-22 seq27 107 2e-18 seq161 104 3e-17 seq4 104 3e-17 seq59 98.7 1e-15 seq2 98.7 1e-15 >seq8 Length=3569224 Score = 120 bits (132), Expect = 4e-22 Identities = 301/450 (67%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 |||||||| || || | || || || ||| || || ||| ||||| || || || Sbjct 616287 TCAAAGCGTCCAGGCCTCAGCAGTGCAGAGTCGAGAATGTCAGCACGGTTAGTAGCTGCA 616346 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 || || | ||||||||| | || ||||||||||| |||||||| |||||||| | | Sbjct 616347 ATTACTATGATGCCCGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGTTGATTAAGG 616406 Query 12825 GTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGG 12882 || ||||| ||||||||||| | | || | |||| | | ||| | || || | Sbjct 616407 GTCTGTTCCCGTTCATCATTTCCTCCTCCAATC--CCCGTTCCTCTTTGTCTTCCAACAG 616464 Query 12883 CGTCAATTTCGTCAATGAAAACGATACAC-GGTTGATTTTCACGGGCAACTTCAAAGATA 12941 | || || || |||| ||| || || ||| || | | | | || | ||| ||| | | Sbjct 616465 CATCGATCTCATCAACGAACACAATGCACGGGGCGTTCTCCTTGGCCTTCTTGAAA-AGA 616523 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACAT 13001 || || |||| | ||||| ||||| |||||||| || ||||| | | ||||| || Sbjct 616524 TCACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCGGAA-AT 616582 Query 13002 TG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 13060 | || || || ||| || ||||||||||| || ||| || | |||||||| || Sbjct 616583 CGAGAAAAATGGAACGCCGGCCTCACCCGCGATCGCCTTGGCTAGCAAAGTCTTCCCAGT 616642 Query 13061 CCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCG 13120 || || || ||||| |||| ||||| | ||||| | | | | | Sbjct 616643 TCCAGGAGGGCCTATAAGAAGAACACCTTTCGGGATGCGTGCACCTACTGCGGTGAATCT 616702 Query 13121 CTCGGGTTGTTTAAGAAAGTCCACGATTTC 13150 |||||||| ||| || || || |||| ||| Sbjct 616703 CTCGGGTTTTTTCAGGAACTCAACGACTTC 616732 >seq27 Length=2003651 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || || || ||||| || || || || || ||||| ||||| Sbjct 1228670 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGGGCATAAGACC 1228729 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || || |||| |||||| |||||||| || ||||| ||||||||||| || || || || Sbjct 1228730 ACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCA 1228789 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || ||||| | || || || || || || | || |||| |||| || ||| Sbjct 1228790 AGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGATTCAATCCACCGCAGCGC 1228849 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| || || | | ||||||||| || | |||||| Sbjct 1228850 CCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCGC 1228891 >seq161 Length=457060 Score = 104 bits (114), Expect = 3e-17 Identities = 270/407 (66%), Gaps = 6/407 (1%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 |||||||| | ||||| | | || || |||| || | |||| | |||||| ||| Sbjct 264192 CGATCAAACCTCCCTGGCCTCAACAGTGCAGCGTCGAGCACATCAGGCCTGTTCGTGGCC 264133 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || | |||| | || | | | ||| ||||||||||| |||| || || || Sbjct 264132 GCTAGCACAATCACACCACTATTCCCAGAGAATCCATCCATCTCCGTCAGCAGCTGGTTA 264073 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 12879 || ||||| || | |||||||| | | | | | ||||| | || ||| | || | Sbjct 264072 ATAGTTTGCTCTCTCTCATCATTGCCA--CCTCCAAGCCCCGCTCCACGCTGCCTCCCCA 264015 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGG-GCAACTTCAAAG 12938 | || ||||| || |||||||| ||||| |||||| | || || || || || Sbjct 264014 CAGCATCAATCTCATCAATGAACACGATGCACGGT-GCCTTCGACTTTGCCTTCTCGAAC 263956 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | || | ||| ||| || |||||||| ||||||| ||||| || | | || | | Sbjct 263955 AAGTCCCTCACCCTCGAAGCTCCGACACCTACAAACAATTCCACGAACTCCGACGCTGCA 263896 Query 12999 CATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 13058 || || ||| || ||| || ||| || |||| ||| || || | || ||||||||| Sbjct 263895 CAAGAGAAGAACGGTACGCCGGCTTCTCCGGCGACGGCACGAGCTAACAGAGTCTTCCCC 263836 Query 13059 GTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 ||||| || ||| | |||||| ||| |||||| | ||||| Sbjct 263835 GTCCCCGGCGGTCCCACCAGAAGGCAACCCTTGGGGATCTTCGCACC 263789 >seq4 Length=5414181 Score = 104 bits (114), Expect = 3e-17 Identities = 295/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 |||||||| || || | || | || |||||| || ||| ||||| || || || Sbjct 2885463 TCAAAGCGTCCCGGCCTCAGCAATGCAGAGTCAAGAATGTCAGCACGGTTAGTAGCTGCA 2885522 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 || || | || ||||| | |||||||||||||| |||||||| |||||||| | | Sbjct 2885523 ATTACTATGACACCCGTATTTCCTTCGAAGCCATCCATTTCAGTCAAAAGTTGATTAAGG 2885582 Query 12825 GTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 12882 || ||||| | ||||||||| | | | | | || || | | ||| | || || | Sbjct 2885583 GTCTGTTCCCTTTCATCATTTCC--TCCTCCGATCCCTGCTCCTCTTTGTCTTCCAACAG 2885640 Query 12883 CGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATAT 12942 | ||||| || |||| || || || || || ||| || ||| | ||| | || Sbjct 2885641 CATCAATCTCATCAACAAACACAATGCAGGGGGCATTCTCCTTGGCTTTCTTAAAAAGAT 2885700 Query 12943 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 13002 | || |||| | ||||| ||||| |||||||| || ||||| | | | ||| || Sbjct 2885701 CACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCTGAA-ATC 2885759 Query 13003 G-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 13061 | || ||||| || || || || ||||| || ||| || | ||||||||| || Sbjct 2885760 GAGAAAAAGGGAACACCGGCCTCGCCGGCGATTGCCTTGGCAAGCAAGGTCTTCCCAGTA 2885819 Query 13062 CCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGC 13121 || || || ||||| |||| ||||||| |||||| | || | | | | Sbjct 2885820 CCCGGAGGGCCTATAAGAAGAACACCTTTCGGGATCCGTGCACCAACTGCAGTGAACCTC 2885879 Query 13122 TCGGGTTGTTTAAGAAAGTCCACGATTTC 13150 || |||| || | || ||||| | ||| Sbjct 2885880 TCTGGTTTCTTCAAGAACTCCACAACTTC 2885908 >seq59 Length=1347071 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || || || |||||||| || || || || ||||| || || Sbjct 1070966 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCC 1071025 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || || |||| ||| || ||||| || || ||||| ||||||||||| || ||||| || Sbjct 1071026 GCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCA 1071085 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 || || || | ||||| || || |||| || || | |||| ||||| | || Sbjct 1071086 AGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCAC-ACGATTCAATCCACTCGAGCG 1071144 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA---GTTCCT 127766 |||||| || || ||| ||| ||||| || | |||||| |||| || ||| Sbjct 1071145 CCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCT 1071204 Query 127767 TCTTTTCTGATGGATCTTTGATGTACTTATCTA 127799 ||| || || |||||||| || | |||| Sbjct 1071205 TCTCGTCGGA---GTCTTTGATATAAGTTTCTA 1071234 >seq2 Length=5918456 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/265 (69%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| || || || |||||||| || | | || || ||||| || || || || | Sbjct 905390 CCTCGTCGCGAGAAATTAGTTCATTGGAAATGTG-AGGCCGGGCATAAGCCCGCGTTTTT 905332 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| ||| || ||||| || || ||||| ||||||||||| || ||||| || || || | Sbjct 905331 TCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAG 905272 Query 127659 CAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 | | ||||| || || |||| || || | |||| ||||| | |||||||| Sbjct 905271 CGACGAGACGATCCGCGAAAGAAGAATCAC-ACGATTCAATCCACTCGAGCGCCCACTTG 905213 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTTCTTTTCT 127774 || || ||| ||| ||||| || | |||||| |||| || |||||| || Sbjct 905212 GCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCGTCG 905153 Query 127775 GATGGATCTTTGATGTACTTATCTA 127799 || ||||||||| || | |||| Sbjct 905152 GA---ATCTTTGATATAAGTTTCTA 905131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500328719360