Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq53 96.9 2e-15 seq34 89.7 4e-13 >seq53 Length=1478458 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||||| || || || || |||||||| || Sbjct 997887 CCACCACGGAGACGAAGCACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGCT 997828 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| ||| || || ||||||||| | |||||| |||| ||| Sbjct 997827 AGAGTGCGGCCATCTTCCAGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGGGGA 997768 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| || | | | | ||| || | || ||||| Sbjct 997767 ATACCTTCCTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCCGAACTCTCCACC 997708 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| ||||| || || || | || || || |||||||||||| Sbjct 997707 TCAAGAGTGATTGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCATG 997660 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||| || || ||||| ||||||||| || || || || |||||||| || Sbjct 997660 GCCACCACGCAACCGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGC 997601 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || | || ||||| || || || |||| || | | |||||| || | ||| Sbjct 997600 AAGGGTACGGCCGTCCTCCAACTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGGGG 997541 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || | ||| | | | ||||| | ||| || | Sbjct 997540 AATACCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCGA 997482 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || ||||| || || || | ||| || |||||||||||||| Sbjct 997481 CTTCCAAGGTTATTGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 997433 >seq34 Length=3699824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||||| |||| ||| | |||||| || || || ||||| || ||||| Sbjct 905044 CCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCA 905103 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || ||||| || || || ||||||| | | |||||| || | ||| Sbjct 905104 AGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 905163 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| ||||| | | | |||| || | || ||| | ||||| | ||| || Sbjct 905164 ATACCTTCCTTGTC-CTGAATCTTTGCCTTCACATTGTCAATG--GTGTCAGAGCTCTCG 905220 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || || || || || || | ||| || ||||||||||||||| Sbjct 905221 ACTTCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 905271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365806723968