Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq27 113 6e-20 seq59 105 8e-18 seq8 102 1e-16 seq4 102 1e-16 seq161 100 4e-16 seq2 98.7 1e-15 seq50 89.7 6e-13 seq6 89.7 6e-13 >seq27 Length=2003651 Score = 113 bits (124), Expect = 6e-20 Identities = 173/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| || ||||| || ||| | ||||| |||||| || |||||| | Sbjct 1228912 GAGAAGTCGCGTCTCTTCCGCGCGATCGATACAGTCCCATGTGTTGCCCGGAAAGCTCAG 1228853 Query 102138 TGGGCTATGAAGTGGTTTGATACAAA-GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 102196 ||||| || |||| |||| || | | || ||| || || || || ||| |||| || Sbjct 1228852 TGGGCGCTGCGGTGGATTGAATCAGACGAAGC-TTCATTCGCAGAACGCCTCGTCGCGTT 1228794 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 ||| || || || || ||||||||||| || || ||||| || || | ||||| || || Sbjct 1228793 TGCTTGCGTAGAAGGCATCTTCTTCTCCGGCTCGTTCTGTGCGATCTTCTGGCTGAAAAA 1228734 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 || ||||| ||||| || ||| || || ||||| || || ||||| ||||| ||||| Sbjct 1228733 ACGTGGTCTTATGCCCGGCCTCACATTTTCAAACGAACTAATTTCTCGCGACGAAGGACT 1228674 Query 102317 CCAC 102320 ||| Sbjct 1228673 TCAC 1228670 >seq59 Length=1347071 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 ||| || || || || ||| |||| ||||| || || || || ||||||||||| || || Sbjct 1071116 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 1071057 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 |||||||| || | |||||| || || || || || ||||| || ||| || ||||| Sbjct 1071056 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAA 1070997 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || || ||||| ||||| ||||| ||| Sbjct 1070996 TGAACTAATTTCTCGCGACGAAGGACTTCAC 1070966 >seq8 Length=3569224 Score = 102 bits (112), Expect = 1e-16 Identities = 249/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | || || || || || || ||| | || || || || || Sbjct 616287 TCAAAGCGTCCAGGCCTCAGCAGTGCAGAGTCGAGAATGTCAGCACGGTTAGTAGCTGCA 616346 Query 15948 ATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || || | || || || ||| || |||| |||||||| || |||||||| || |||| Sbjct 616347 ATTACTATGATGCCCGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGTTGATTAA 616404 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 16063 || ||||||||||||||||| || | | | | || | | | ||| |||| || Sbjct 616405 GGGTCTGTTCCCGTTCATCATTTCCT--CCTCCAATCCCCGTTCCTCTTTGTCTTCCAAC 616462 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCA-TGGTTGATTTTCGCGAGCGACTTCAAAGA 16122 ||||| |||||||||| ||| || ||||| || | | | | | | ||| ||| | Sbjct 616463 AGCATCGATCTCATCAACGAACACAATGCACGGGGCGTTCTCCTTGGCCTTCTTGAAA-A 616521 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || ||| || |||||||| |||||||| || ||||| | | ||||| Sbjct 616522 GATCACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCGGAA- 616580 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || || || || | |||||||| || || ||| || | |||||| || Sbjct 616581 ATCGAGAAAAATGGAACGCCGGCCTCACCCGCGATCGCCTTGGCTAGCAAAGTCTTCCCA 616640 Query 16242 GTACCTGG 16249 || || || Sbjct 616641 GTTCCAGG 616648 >seq4 Length=5414181 Score = 102 bits (112), Expect = 1e-16 Identities = 178/255 (70%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT--TTCGTTATCAA 15975 ||||| || ||| | || || || || || || || | | ||| || ||| || | | Sbjct 2885493 TCAAGAATGTCAGCACGGTTAGTAGCTGCAATTACTATGACACCCGTATTTCCTT--CGA 2885550 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| || |||||||| || |||| || ||||||| ||||||||| || | Sbjct 2885551 AGCCATCCATTTCAGTCAAAAGTTGATTAAGGGTCTGTTCCCTTTCATCATTTCCT--CC 2885608 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | || || | | ||| |||| || |||||||||||||||| || || ||||| Sbjct 2885609 TCCGATCCCTGCTCCTCTTTGTCTTCCAACAGCATCAATCTCATCAACAAACACAATGCA 2885668 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || || | ||| ||||| || || ||| || |||||||| || Sbjct 2885669 GGGGGCATTCTCCTTGGCTTTCTTAAAAAGATCACGAACTCGCGATGCACCCACACCGAC 2885728 Query 16154 AAACATCTCCACAAA 16168 |||||| || ||||| Sbjct 2885729 AAACATTTCTACAAA 2885743 >seq161 Length=457060 Score = 100 bits (110), Expect = 4e-16 Identities = 240/359 (67%), Gaps = 8/359 (2%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| |||| ||||||||||||||||| || | |||||||| | | Sbjct 264102 AATCCATCCATCTCCGTCAGCAGCTGGTTAATAGTTTGCTCTCTCTCATCATTGCCA--C 264045 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || || | || ||| | ||||| |||||||||||||||||||| ||||||| Sbjct 264044 CTCCAAGCCCCGCTCCACGCTGCCTCCCCACAGCATCAATCTCATCAATGAACACGATGC 263985 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | ||| |||| | || || || | |||| || | | || || ||||| Sbjct 263984 ACGGT--GCCTTCGACTTTGCCTTCTCGAACAAGTCCCTCACCCTCGAAGCTCCGACACC 263927 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| ||||| || | | || | ||| || ||| || || | ||| || Sbjct 263926 TACAAACAATTCCACGAACTCCGACGCTGCACAAGAGAAGAACGGTACGCCGGCTTCTCC 263867 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | ||| || || | |||||||| ||||| || ||| ||| | || ||| ||| Sbjct 263866 GGCGACGGCACGAGCTAACAGAGTCTTCCCCGTCCCCGGCGGTCCCACCAGAAGGCAACC 263807 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || ||||| || || | | |||| | || || | ||| | ||||| |||| Sbjct 263806 CTTGGGGATCTTCGCACCGAGTGCGGTGTATTTATCTGGATTCTTCAAGAAATCGACAA 263748 >seq2 Length=5918456 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 ||| || || || || ||| |||| ||||| || || || || ||||||||||| || || Sbjct 905249 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 905308 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 |||||||| || | |||||| || || || || || ||||| || ||| | | ||||| Sbjct 905309 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTC-ACATTTCCAA 905367 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || || ||||| ||||| ||||| ||| Sbjct 905368 TGAACTAATTTCTCGCGACGA-GGACTTCAC 905397 >seq50 Length=1516725 Score = 89.7 bits (98), Expect = 6e-13 Identities = 192/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || |||| |||||||| | || || || ||||| || ||| || | Sbjct 759190 AACCCATCCATTTCAGTCAGCAGCTGGTTCAGTGTCTGCTCTCGTTCGTCGTTCCCT--C 759133 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || | | | ||| |||| || ||||| ||||| || || ||||| | | Sbjct 759132 CTCCAATTCCGGTTCCTCTCTGCCTTCCTACTGCATCTATCTCGTCTATAAAGACTAGAC 759073 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 |||| |||||| || |||| || | ||||| ||| |||| |||||||| Sbjct 759072 ATGGCGAATTTTCCTTTGC--CTTCTTGAACAAATCCCT--CACTCTTGAGGCGCCCACG 759017 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 |||||||||||||| || || | || | ||| || ||| || || | ||| Sbjct 759016 CCAACAAACATCTCGACGAACTCTGATCCAGAAAGAGAGAAGAACGGAACTCCTGCTTCC 758957 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || |||||| || ||||| |||||||||||||| || Sbjct 758956 CCTGCTATGGCTTTTGCCAGAAGTGTCTTACCCGTACCAGG 758916 >seq6 Length=4684332 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 23046 CAACACTTCCAGTTCCTATCGCAATTGAGACAACTCACAAAAGTTGTCATTGGTTCATCC 23105 ||| ||||||||| ||| ||| || | ||| | ||| | || |||||||||||||| Sbjct 2438369 CAAAACTTCCAGTGATTATTGCAGTTTACACAGGTAACATAGGTCGTCATTGGTTCATCG 2438310 Query 23106 GCAGACCGAGTTTGAAGTTGATAATAGGTTGT-TTTCTTTG 23145 ||| ||||||||| ||||||||||||||||| |||| ||| Sbjct 2438309 GCACTCCGAGTTTGCAGTTGATAATAGGTTGTCTTTCGTTG 2438269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735447685120