Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq59 104 3e-17 seq161 98.7 1e-15 seq2 91.5 2e-13 >seq59 Length=1347071 Score = 104 bits (114), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| ||||| || ||||| || || ||||| || || || ||||| || || Sbjct 1070967 TGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCCG 1071026 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||| || ||||||||||| || || || || || ||||||||||| ||||| || Sbjct 1071027 CGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAA 1071086 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG----GTCGAGACTTGTCGAACCACTTGAGAGC 119683 || ||||||| ||||| || || |||| || | || || | ||||| ||| || Sbjct 1071087 GCAAAAGCGACGAGACGATCCGCGAAAGAAGAATC-ACACGATTCAATCCACTCGAGCGC 1071145 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||| ||||| ||||| | | || |||||||| | ||| || Sbjct 1071146 CCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGC 1071187 >seq161 Length=457060 Score = 98.7 bits (108), Expect = 1e-15 Identities = 213/316 (67%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650 ||| || ||||| || || || |||||||| || || || || | |||||| ||| | Sbjct 264103 GAATCCATCCATCTCCGTCAGCAGCTGGTTAATAGTTTGCTCTCTCTCATCATTGCCACC 264044 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | || || ||||| | | || ||||| ||||||||||| ||||| ||||| | Sbjct 264043 TCCAAGCCCC-GCTCCACGCTGCCTCCCCACAGCATCAATCTCATCAATGAACACGATGC 263985 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 ||||| || | ||||| ||||| | || | || | | ||||| ||||||| Sbjct 263984 ACGGTGCCTTCGACTTTGCCTTCTCGAACAAGTCCCTCACCCTCGAAGCTCCGACACCTA 263925 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 | |||| || ||||| | | || | ||| | ||| || || | || || | Sbjct 263924 CAAACAATTCCACGAACTCCGACGCTGCACAAGAGAAGAACGGTACGCCGGCTTCTCCGG 263865 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 ||| ||| ||||| | |||||||| ||||| || || | || | |||||| || Sbjct 263864 CGACGGCACGAGCTAACAGAGTCTTCCCCGTCCCCGGCGGTCCCACCAGAAGGCAACCCT 263805 Query 11891 GGGGGATCTTGGCACC 11906 ||||||||| ||||| Sbjct 263804 TGGGGATCTTCGCACC 263789 >seq2 Length=5918456 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/222 (70%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| ||| | || ||||| || || ||||| | | | | || ||||| || || Sbjct 905396 TGAAGTCCT-CGTCGCGAGAAATTAGTTCATTGGAAATGTGAGG-CCGGGCATAAGCCCG 905339 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||| || ||||||||||| || || || || || ||||||||||| ||||| || Sbjct 905338 CGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAA 905279 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG----GTCGAGACTTGTCGAACCACTTGAGAGC 119683 || ||||||| ||||| || || |||| || | || || | ||||| ||| || Sbjct 905278 GCAAAAGCGACGAGACGATCCGCGAAAGAAGAATC-ACACGATTCAATCCACTCGAGCGC 905220 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||| ||||| ||||| | | || |||||||| | ||| || Sbjct 905219 CCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGC 905178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969403468800