Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 seq8 107 2e-18 seq59 104 3e-17 seq27 104 3e-17 seq2 100 3e-16 seq50 93.3 5e-14 >seq4 Length=5414181 Score = 111 bits (122), Expect = 2e-19 Identities = 180/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9282 ||||| || ||| | || || || || || || || | | ||| || ||| || | | Sbjct 2885493 TCAAGAATGTCAGCACGGTTAGTAGCTGCAATTACTATGACACCCGTATTTCCTT--CGA 2885550 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| || ||||||||||| |||| || ||||||| ||||||||| || | Sbjct 2885551 AGCCATCCATTTCAGTCAAAAGTTGATTAAGGGTCTGTTCCCTTTCATCATTTCCT--CC 2885608 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | || || | | ||| |||| || |||||||||||||||| || ||||| || Sbjct 2885609 TCCGATCCCTGCTCCTCTTTGTCTTCCAACAGCATCAATCTCATCAACAAACACAATGCA 2885668 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | ||| ||||| ||||| | || |||||||| || Sbjct 2885669 GGGGGCATTCTCCTTGGCTTTCTTAAAAAGATCACGAACTCGCGATGCACCCACACCGAC 2885728 Query 9461 AAACATCTCCACAAA 9475 |||||| || ||||| Sbjct 2885729 AAACATTTCTACAAA 2885743 >seq8 Length=3569224 Score = 107 bits (118), Expect = 2e-18 Identities = 248/367 (68%), Gaps = 10/367 (3%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | || || || || || || ||| | || || || || || Sbjct 616287 TCAAAGCGTCCAGGCCTCAGCAGTGCAGAGTCGAGAATGTCAGCACGGTTAGTAGCTGCA 616346 Query 9255 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || || | || || || ||| || |||| |||||||| || ||||||||||| |||| Sbjct 616347 ATTACTATGATGCCCGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGTTGATTAA 616404 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9370 || ||||||||||||||||| || | | | | || | | | ||| |||| || Sbjct 616405 GGGTCTGTTCCCGTTCATCATTTCCT--CCTCCAATCCCCGTTCCTCTTTGTCTTCCAAC 616462 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||| |||||||||| ||| ||||| || || || || ||| | | || || Sbjct 616463 AGCATCGATCTCATCAACGAACACAATGCACGGGGCGTTCTCCTTGGCCTTCTTGAAAAG 616522 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 ||| ||||| | || |||||||| |||||||| || ||||| | | ||||| | Sbjct 616523 ATCACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCGGAA-A 616581 Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || || || || | |||||||| || || ||| || | |||||| || | Sbjct 616582 TCGAGAAAAATGGAACGCCGGCCTCACCCGCGATCGCCTTGGCTAGCAAAGTCTTCCCAG 616641 Query 9550 TACCTGG 9556 | || || Sbjct 616642 TTCCAGG 616648 >seq59 Length=1347071 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || || || ||||| |||||||| || || ||||| ||||| || || Sbjct 1070966 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCC 1071025 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || || |||| |||| | || |||||||| || |||||||||||||| || ||||| || Sbjct 1071026 GCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCA 1071085 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| || | || || || ||||| || Sbjct 1071086 AGCAAAAGCGACGAGACGATCCGCGAAAGA 1071115 >seq27 Length=2003651 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || || || ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 1228670 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGGGCATAAGACC 1228729 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || || |||| ||| | || || ||||| || |||||||||||||| || || || || Sbjct 1228730 ACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCA 1228789 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 |||||||| | ||||| || ||||| || Sbjct 1228790 AGCAAACGCGACGAGGCGTTCTGCGAATGA 1228819 >seq2 Length=5918456 Score = 100 bits (110), Expect = 3e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || || ||||| |||||||| || | | ||||| ||||| || || || || | Sbjct 905390 CCTCGTCGCGAGAAATTAGTTCATTGGAAATGTG-AGGCCGGGCATAAGCCCGCGTTTTT 905332 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| |||| | || |||||||| || |||||||||||||| || ||||| || ||||| | Sbjct 905331 TCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAG 905272 Query 117413 CAAAAAGGCGCTCGGCGAAGGA 117434 | | || || || ||||| || Sbjct 905271 CGACGAGACGATCCGCGAAAGA 905250 >seq50 Length=1516725 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || |||| || ||||| | || || || ||||| || ||| || | Sbjct 759190 AACCCATCCATTTCAGTCAGCAGCTGGTTCAGTGTCTGCTCTCGTTCGTCGTTCCCT--C 759133 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || | | | ||| |||| || ||||| ||||| || || ||||| | || Sbjct 759132 CTCCAATTCCGGTTCCTCTCTGCCTTCCTACTGCATCTATCTCGTCTATAAAGACTAGAC 759073 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 |||| |||||| || | | || | ||| | || ||| ||||||||| |||| Sbjct 759072 ATGGCGAATTTTCCTTTGCCTTCTTGAACAAATCCCTCACTCTTGAGGCGCCCACGCCAA 759013 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||||||| || || | || | ||| || ||| || || | ||| || | Sbjct 759012 CAAACATCTCGACGAACTCTGATCCAGAAAGAGAGAAGAACGGAACTCCTGCTTCCCCTG 758953 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | |||||| || ||||| |||||||||||||| || Sbjct 758952 CTATGGCTTTTGCCAGAAGTGTCTTACCCGTACCAGG 758916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974192215040