Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq321 428 5e-115 seq188 87.8 2e-12 seq14 82.4 9e-11 seq12 82.4 9e-11 >seq321 Length=132638 Score = 428 bits (474), Expect = 5e-115 Identities = 477/633 (75%), Gaps = 3/633 (0%) Strand=Plus/Minus Query 179929 TCATC-TCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 179987 ||||| |||||||| || ||||| |||| || || ||| | || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 179988 TGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTC 180047 |||||||| ||||| |||| |||||| | || || || ||||||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 180048 TTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGC 180107 | |||||| | |||| | | |||||||||||||||||||||||| || || Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 180108 TTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166 |||||||||| || ||||| ||| || |||||||| ||||| || || || || |||| Sbjct 86872 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 86814 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 ||| ||| | |||| ||| |||||||||| || ||||| | ||||| | || || Sbjct 86813 TGTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAAT 86754 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286 || || || ||||||| |||| |||| ||||| || |||||||||||||| ||||| || Sbjct 86753 ATCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCC 86694 Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346 ||||||||| | |||||||| ||||| ||||||||||| || ||| || ||||| || Sbjct 86693 ATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 86634 Query 180347 TTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGG 180406 ||| |||| |||||| || | | |||||||| |||| || || || | || Sbjct 86633 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGG 86574 Query 180407 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGG 180466 ||||| || |||||||| ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 86573 TTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGG 86514 Query 180467 TCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526 || |||||||||| ||||| ||||||||||| ||||| || |||||||| |||| Sbjct 86513 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGC 86454 Query 180527 AGCATGGCCTGTCGTTGGCATCTGGTTCACTGC 180559 || |||||||| || || |||||||||||||| Sbjct 86453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 >seq188 Length=392610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 344814 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 344755 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 344754 CCTACTTGGGGAG 344742 >seq14 Length=2986515 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 2667074 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 2667015 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 2667014 CCTACTTGGGGAG 2667002 >seq12 Length=3822408 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || || ||||| | ||||||||||||| ||| Sbjct 2257652 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTATTAATTGATTGGTCGTAGGTTCGAAT 2257593 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 2257592 CCTACTTGGGGAG 2257580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610389963555840