Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq321 360 2e-94 seq38 95.1 1e-14 >seq321 Length=132638 Score = 360 bits (398), Expect = 2e-94 Identities = 465/641 (73%), Gaps = 1/641 (0%) Strand=Plus/Minus Query 169583 TCATC-TCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATC 169641 ||||| |||||||| || |||| | || ||||| || | || |||||||| ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 169642 TGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATC 169701 |||||||||||| |||||||||| ||||| || ||||| ||||||||| | | | | Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 169702 TTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 169761 | |||||| | ||||| | | |||||||| | |||||||||| | | | Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 169762 TTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCT 169821 | || |||||||||||||| ||||||||| || || || || | ||||| ||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 169822 GTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 169881 || ||||| | ||||| | ||||| || || |||||||||||||| |||| || Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 169882 TCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCT 169941 ||||||||||||||||| ||| | || ||||| || ||||| ||||| || |||||||| Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 169942 TTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGT 170001 ||||||||| ||||||||| || | ||||| || || ||||| || ||||||||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 170002 TCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGT 170061 || | || || || | | ||||| ||||| ||||| | || || || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 170062 TATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 170121 || | ||||| ||||| |||||||| ||||| || ||||| || || ||||| ||||| Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 170122 CGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCA 170181 || | |||||||| |||||| ||||||||||| | ||||||||||| | || Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 170182 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | || ||||| ||| || | ||||| || || | ||||| Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 86412 >seq38 Length=1794542 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 153767 GCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 153826 ||| |||||||| | || ||||| || || ||||| ||||| |||||| | || || | Sbjct 125666 GCAGAGGTTTGGCGTACCGATGGGTTACGGTGGTCCCCATGCGGCATTCCTCGCGACTTC 125607 Query 153827 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAG--TAGATAGTGAA 153884 | |||| ||| | | ||| || || |||||| | || ||| || | ||| | Sbjct 125606 GCAGGAGTACAAGCGGATGATGCCCGGGAGAATTATCGG--AGTTAGCGTTGATTCTACT 125549 Query 153885 GGTAATAAAGCA-TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAA 153943 ||||| || | | ||| ||| | ||||| ||||| || || ||||| ||||| || Sbjct 125548 GGTAAGCCGGCTCTTCGGATG-GCAATGCAGACCAGAGAACAACACATCAGAAGAGATAA 125490 Query 153944 AGCAACCAGTAACATCTGCACAGCTCAGG 153972 ||| ||||| ||||||||||| ||||||| Sbjct 125489 AGCCACCAGCAACATCTGCACTGCTCAGG 125461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579206312816640