Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq321 419 3e-112 >seq321 Length=132638 Score = 419 bits (464), Expect = 3e-112 Identities = 473/632 (75%), Gaps = 1/632 (0%) Strand=Plus/Minus Query 168044 TCATC-TCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATC 168102 ||||| |||||||| || | ||| ||||| ||||| || | || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 168103 TGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTC 168162 |||||||||||||| | ||||||||||| || || || ||||||| ||||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 168163 TTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCGT 168222 | |||||| | | ||| | | |||||||| ||||| ||||||||| | ||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 168223 TTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCA 168282 | ||||||||||| ||||| ||||||||| || || || || || || || | ||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 168283 GTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATC 168342 || ||| | | || ||| |||||||||| ||||| ||||||| ||||| | ||||| Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 168343 TCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCC 168402 ||||| || ||||||| |||| | || ||||| || |||||||| || || |||||||| Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 168403 TTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGA 168462 ||||| ||| | || || ||||| ||||| || || | || ||||||||||| || Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 168463 AGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGT 168522 ||||| || ||| | | | || || || || |||| |||||| || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 168523 TACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGT 168582 |||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||| || || Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 168583 CGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCT 168642 || |||||||||||||| ||| ||||||||||| || ||| | |||||||| | ||| Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 168643 GCATGGCCTGTTGTCGGCATCTGGTTCACCGC 168674 || |||||||| || || ||||||||||| || Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574467165895680