Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq321 369 4e-97 seq8 89.7 6e-13 >seq321 Length=132638 Score = 369 bits (408), Expect = 4e-97 Identities = 467/641 (73%), Gaps = 1/641 (0%) Strand=Plus/Minus Query 168672 TCATC-TCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 ||||| || ||||| || |||| |||| || || ||| | || |||||||| || Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 ||||||||||| | | |||||||||||||| ||||| |||||||| | | | | Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | ||||| | ||||| || ||| ||||||||||||||| ||||||| Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 || || || |||||||||||| | |||||||| || ||||||||||| ||||||||||| Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 ||||| ||| ||||||||| ||| | ||||| || || |||||| || ||||||||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || | ||||| ||| | | ||||| || || || || | |||||| || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||| ||||||||||| |||||||| || ||||| || || || ||||| || || || Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 |||| |||||||| ||||| |||||||||||||| | || |||||||| | || Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTAT 169311 | | || || ||| || | ||||| || || | ||||| Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 86412 >seq8 Length=3569224 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/230 (70%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 169022 ATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCA 169081 |||||||| ||||| ||| ||||||||| | | ||| || |||||| || Sbjct 2145667 ATGCATCCATTCCACATGTTAGGAGTAGCTAATGTATTC------TCCCTATTCAGTGCT 2145720 Query 169082 ATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACT-ACTGAGGAAGAATCTCA 169140 ||||||| || | ||||| ||| | | |||| ||| | | || || | |||||| Sbjct 2145721 ATGCATGATTTCTTGGTAACCTCTAGTTTTATCA-AGAAAATGACAGAAAATGAATCTGC 2145779 Query 169141 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCAC---- 169196 || | ||||| | || |||||||| |||||||| || ||||| || || || | Sbjct 2145780 TAATGAAGGTTATAGATTTGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCTGCT 2145839 Query 169197 -ATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 |||| | ||| | |||| ||||| || ||||| |||||||||||||| Sbjct 2145840 CATGGTTG-TTCAGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTC 2145888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564435278254080