Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq321 435 3e-117 seq8 95.1 1e-14 >seq321 Length=132638 Score = 435 bits (482), Expect = 3e-117 Identities = 481/635 (76%), Gaps = 7/635 (1%) Strand=Plus/Minus Query 162566 TCATC-TCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 162624 ||||| |||||||| || |||| |||| || || ||| | || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 162625 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 162684 |||||||| ||||| ||||||||||| | || || || ||||||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 162685 TTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGT 162744 | |||||| | | || | | |||||||| ||||| |||||||| || |||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 162745 CTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGC 162803 || ||||||||||| ||||| ||| || ||||| || || ||||||||||| || | || Sbjct 86872 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 86814 Query 162804 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGG--T 162861 || ||| || |||| ||| |||||||||| ||| ||||| | ||||| || || | Sbjct 86813 TGTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAAT 86754 Query 162862 ATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAT 162921 ||||| |||| ||||||| |||| |||| ||||| || ||||||||||| || |||||| Sbjct 86753 ATCAG--GTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCAT 86696 Query 162922 CCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCAC 162981 || ||||||||||| || || || ||||| ||||| ||||| || |||||||| ||||| Sbjct 86695 CCATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCAT 86636 Query 162982 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 163041 ||||| ||||| || ||| | || | || || || |||| || || || | Sbjct 86635 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAA 86576 Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 ||||||| ||||||||||| ||||| || ||||| ||||| || || |||||||| || Sbjct 86575 GGTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTT 86516 Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161 || || ||||||||||||||||| ||||||||||| |||||| | |||||||| | Sbjct 86515 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTG 86456 Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 163196 ||||| |||||||| || || ||||||||||| || Sbjct 86455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 >seq8 Length=3569224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 162916 ATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCA 162975 |||||||| ||||||||||| || || || ||| ||| || || |||||||| Sbjct 2145667 ATGCATCCATTCCACATGTTAGGAGTAGCTAATGTATTC------TCCCTATTCAGTGCT 2145720 Query 162976 ATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAG 163035 ||||| | || ||||| || ||| | || | | ||| |||| ||| || Sbjct 2145721 ATGCATGATTTCTTGGTAACCTCTAGTTTTATCAAGAAAATGACAGAAAATGAATCTGCT 2145780 Query 163036 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCC----- 163090 || | ||||| | || |||||||| ||||| || ||||| ||||| || || | Sbjct 2145781 AATGAAGGTTATAGATTTGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCTGCTC 2145840 Query 163091 ATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCC 163141 |||||| ||| | || |||||||| |||||||| ||||||||||||| Sbjct 2145841 ATGGTTG-TTCAGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCCC 2145890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557577755059200