Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq321 417 1e-111 >seq321 Length=132638 Score = 417 bits (462), Expect = 1e-111 Identities = 476/635 (75%), Gaps = 7/635 (1%) Strand=Plus/Minus Query 181975 TCATC-TCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATC 182033 ||||| |||||||| || | || | || || || ||| | || |||||||| ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 182034 TGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTT 182093 |||||||| || || ||||||||||| | || || || ||||||| |||| ||||| Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 182094 TTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTAC 182150 | |||||| | | || | || || | ||||||| ||||||||||||||| || | Sbjct 86932 CTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 86876 Query 182151 CGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCT 182210 || | ||||||||||| ||||| ||| ||||| || ||||| || || || || || Sbjct 86875 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 86816 Query 182211 GCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGA 182270 ||||| ||||| |||| ||| |||||||||| || || |||| ||||| | ||| Sbjct 86815 GCTGTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGA 86756 Query 182271 ATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCAT 182330 || ||||| || ||||||| ||| | || ||||| || ||||||||||| ||||||||| Sbjct 86755 ATATCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCAT 86696 Query 182331 CCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCAC 182390 || ||||||||||| || ||||| ||||||||||| ||||| || || ||||| ||||| Sbjct 86695 CCATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCAT 86636 Query 182391 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTAT 182450 ||||| ||||| || ||| | || | || || || || | || || || | Sbjct 86635 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAA 86576 Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTC 182510 ||||||| ||||||||||| ||||| || || || ||||| || || ||||| || || Sbjct 86575 GGTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTT 86516 Query 182511 GGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 182570 || || |||||||||||||| || ||||||||||| |||||| | |||||||| | Sbjct 86515 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTG 86456 Query 182571 GCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGC 182605 ||||| |||||||| || || ||||||||||| || Sbjct 86455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611689149004800