Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 118 1e-21 seq27 111 2e-19 >seq9 Length=4860633 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | |||| |||||| | |||| | || | ||||| || ||||| ||| Sbjct 1349672 CCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCCA 1349731 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | ||||| || || |||||| || ||| | || | |||||| || ||| Sbjct 1349732 TTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGAA 1349791 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACA-CCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || |||| ||| | |||||| | ||||| ||||||||||| Sbjct 1349792 ACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAA-AGTATCATAAAT 1349850 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 |||||| ||||| || ||| |||| Sbjct 1349851 TCCTTCAATACTGTCTTCTTTCAT 1349874 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || || || || || |||||| ||||||| || || | ||| | Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| ||| || || || ||||| | ||| || | || | || ||| ||||||| Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | || ||||||||||| | ||| | | ||||| ||||| || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCG 48812 | || ||||||||||| |||| || ||||||| Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCG 1350204 >seq27 Length=2003651 Score = 111 bits (122), Expect = 2e-19 Identities = 428/664 (64%), Gaps = 20/664 (3%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| || || || | ||||| || || ||||||||||| || |||| | || || | Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttt--tGAATCCTAATTCTAAT 18786 ||||| |||| || ||||| ||||| || ||||| | ||| || | | Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGA--CCGAGAGCGCCG 1228481 Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 || | || ||| || || |||| ||||| | |||| | ||| | |||||||| | Sbjct 1228482 AGCAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACC 1228541 Query 18847 AATTTAACAGGTAGTGCATCTGTA-AGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 || || || || | || | | ||||| | ||||||| ||||| || || Sbjct 1228542 AACGCGCATGGGAGCGCGT-TGCAGATGAATTCCCGCTCTATATCCACTGCGTCGATTAC 1228600 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTA---TAGAAGA-TGTTTAAACATCAAAC 18961 || ||| |||| ||||| | | || ||||| | ||| ||| |||| Sbjct 1228601 GATCGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTATAAT----AAAC 1228656 Query 18962 ATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021 | || ||||| || || ||||| ||||| | | || | ||| || |||||||| | | Sbjct 1228657 AAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGC 1228716 Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081 | ||||| || || | |||||| | |||||| || | | || || || || ||||| | Sbjct 1228717 CGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGA 1228776 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAA 19141 | |||||||| ||||| || || || | |||| | | ||| || | | || Sbjct 1228777 TGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGATTCAA 1228836 Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201 |||| ||| ||||| | ||| ||| |||||||| | ||| || || | | Sbjct 1228837 TCCACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCGCGCGGA 1228896 Query 19202 ATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA---CTGTACA 19258 | ||| | ||| || | ||||| | ||||| || ||||| | ||||||| Sbjct 1228897 AGAGACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTC---CAATAGAAGGCTGTACA 1228953 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 ||||||| || || || || || || ||||| || || || || |||||||||| || Sbjct 1228954 TTTCTGAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAATGCCCTTGCTTCTGCTA 1229013 Query 19319 TCTG 19322 ||| Sbjct 1229014 CCTG 1229017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102504381440