Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq321 322 1e-83 >seq321 Length=132638 Score = 322 bits (356), Expect = 1e-83 Identities = 422/582 (73%), Gaps = 2/582 (0%) Strand=Plus/Plus Query 5384 ACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATAC 5443 || || ||||||| ||||| ||||| |||| ||| ||||| || |||||||| Sbjct 86439 ACTACAGGCCAAGCAGCCAAAAAGAAGTGTAGGGAACGAGAGTTGTTGAAACTAGCATAT 86498 Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 |||||||| | || ||||| || |||||||| || || || || || |||||||||||| Sbjct 86499 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAAGTTTCTTCCTCT 86558 Query 5504 TGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA 5563 || |||||| | || || | || ||| | || ||||| | || | | Sbjct 86559 TGACCGAATCTGTAACCTTCATTAGCAGATTCGTTTTCTGTGGTTTCCCTGATCAAACTA 86618 Query 5564 GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACA 5623 || || || | |||||||||||| ||| | | || |||||||| ||||| || Sbjct 86619 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACT 86678 Query 5624 CCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAG 5683 || | ||||||||| |||||||||||||| ||||| || ||||||||||| | ||| ||| Sbjct 86679 CCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATACAATCATGAAG 86738 Query 5684 TTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGG 5743 || |||||||| || || || | ||||||||||||| |||||||| || |||| |||| Sbjct 86739 TTGAAAGTACCTGATATTCCTAAAGGCATACCATCAGAAAAACTTCCTTGACCGATAGGG 86798 Query 5744 TATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCA 5802 || | || || || | |||| || || ||||| || ||||||||||| || |||||| Sbjct 86799 TAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 86857 Query 5803 TGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACC 5862 || ||||| || | | | ||||||||||||| | || |||| |||| || | ||| Sbjct 86858 AGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 86917 Query 5863 AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAG 5922 || | |||||| | || | |||| || || || |||||||| | ||| ||||| | Sbjct 86918 AAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCATTGTATAACCACTCATCAAC 86977 Query 5923 ATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 | |||||||||||||| || ||||| || || || || || Sbjct 86978 AGATGCTGCTTCCCAGATCGGGTAGAAATGCAAACCTATAGC 87019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152647975808256