Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq321 324 4e-84 >seq321 Length=132638 Score = 324 bits (358), Expect = 4e-84 Identities = 423/581 (73%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||||| ||||| |||| ||| || || || |||||||| ||| Sbjct 86442 ACAGGCCAAGCAGCCAAAAAGAAGTGTAGGGAACGAGAGTTGTTGAAACTAGCATATTGG 86501 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 ||||| | || ||||| || |||||||| || || || || || || ||||| ||||| Sbjct 86502 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAAGTTTCTTCCTCTTGA 86561 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGT-GAG 25821 |||||| | || || | || |||||| | || ||||| | || || | ||| Sbjct 86562 CCGAATCTGTAACCTTCATTAGCAGATTCGTTTTCTGTGGTTTCCCTGATCAAACTAGAG 86621 Query 25822 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 25881 | || |||| || ||||||||| ||||| | || |||||||| || || || Sbjct 86622 GT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACT 86678 Query 25882 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAA 25941 || | ||| ||||| |||||||||||||| ||||| || ||||| || |||| ||| || Sbjct 86679 CCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATACAATCATGAAG 86738 Query 25942 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 26001 |||||||| ||||| || || | ||||||||||||||| ||||| ||||| || | |||| Sbjct 86739 TTGAAAGTACCTGATATTCCTAAAGGCATACCATCAGAAAAACTTCCTTGACCGATAGGG 86798 Query 26002 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 26061 |||| ||||| |||||| || ||||||||||| |||||||| || ||| ||||| Sbjct 86799 TAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 86858 Query 26062 GGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCG 26121 || | ||| || || | ||||||||||||| | || |||| |||| | | || Sbjct 86859 GGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 86918 Query 26122 ATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGG 26181 | | ||||| | ||||| |||| ||| || || || || || |||||||| || | Sbjct 86919 AGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCATTGTATAACCACTCATCAACA 86978 Query 26182 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 26222 | ||| ||||||||||| |||||||| || | ||| || || Sbjct 86979 GATGCTGCTTCCCAGATCGGGTAGAAATGCAAACCTATAGC 87019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991982788096