Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq34 114 1e-20 seq143 111 1e-19 seq251 107 2e-18 seq2 102 6e-17 seq81 89.7 4e-13 >seq34 Length=3699824 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || || || |||||||| ||||| | || | | | || |||||||||||||| ||||| Sbjct 904852 TCCTTCTGGATATTGTAGTCGGCAAGGGTACGGCCGTCTTCCAATTGCTTACCAGCAAAA 904911 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 |||| | ||| || || || ||||| ||||| || || |||||||| || || | Sbjct 904912 ATCAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGAATTTTGGCCTTCACGTTA 904971 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||| || || | || ||||||||||||| ||| ||||| || | || || || Sbjct 904972 TCGATAGTATCCGAACTCTCAACTTCAAGAGTGATCGTCTTGCCAGTAAGGGTCTTCACG 905031 Query 101459 AATATCTGCAT 101469 || |||||||| Sbjct 905032 AAGATCTGCAT 905042 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || ||| || || || || ||||| ||||| | || | | | || |||| || Sbjct 904611 ATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTG 904670 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || |||||||||| | ||| ||||| || || ||||||||||| || |||||||| Sbjct 904671 CTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTT 904730 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | ||||| || || |||| || || ||||| Sbjct 904731 CGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGT 904790 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || ||||||||||| ||||| Sbjct 904791 AAGGGTCTTTACAAATATTTGCAT 904814 >seq143 Length=574977 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || ||||| || || || ||||||||||| || | || | | | || || | || Sbjct 165606 ATGCAGAGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTGCGGCCGTCTTCGAGCTG 165665 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | ||||| ||||| || |||||||| || |||||||| || || Sbjct 165666 CTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTT 165725 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||| ||||||| || || || || |||| ||| || || || Sbjct 165726 CGCCTTCACATTATCAATAGTATCAGACGACTCGACCTCGAGGGTGATCGTCTTCCCAGT 165785 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 165786 GAGGGTCTTCACAAAGATCTGCAT 165809 >seq251 Length=123057 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || ||||| || || || ||||||||||| || | || | | | || || | || Sbjct 98305 ATGCAGAGTAGACTCCTTCTGAATATTGTAATCTGCAAGGGTGCGGCCGTCTTCGAGCTG 98364 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | ||||| ||||| || |||||||| || |||||||| || || Sbjct 98365 CTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTT 98424 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||| ||||||| || || || || |||| || || ||||| Sbjct 98425 CGCCTTCACATTATCAATAGTATCAGACGACTCAACCTCGAGGGTGATTGTCTTCCCGGT 98484 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 98485 GAGGGTCTTCACGAAGATCTGCAT 98508 >seq2 Length=5918456 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || ||||||||||||| ||||| | || || Sbjct 561213 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCG 561154 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || |||| | ||| ||||| || || || || || || |||||| Sbjct 561153 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 561094 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| | || | ||||| || | ||| || ||||| |||| || ||| Sbjct 561093 ATCTTGGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTTG 561034 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 561033 CCAGTGAGGGTCTTGACAAAGATCTGCAT 561005 >seq81 Length=1043490 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | ||||| | ||||| || || ||||| || ||||| ||||| | Sbjct 708348 TTCCACCTCTGAGTCTCAAAACCAGGTGAAGTGTTGACTCTTTCTGAATATTATAATCAG 708289 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | |||| |||| ||||||||||| || ||||| || | ||||| |||||||| | Sbjct 708288 CAAGGGTTCGTCCATCCTCCAATTGCTTCCCGGCAAAGATTAGCCGCTGCTGATCGGGAG 708229 Query 101361 GAATGCCTTCTTTATCTTG 101379 | || ||||| || || || Sbjct 708228 GTATACCTTCCTTGTCCTG 708210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396274072639872