Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq32 118 8e-22 seq34 113 3e-20 seq143 105 5e-18 seq251 100 2e-16 seq2 91.5 1e-13 seq300 89.7 4e-13 seq53 89.7 4e-13 >seq32 Length=1954954 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| |||||| || ||||| || || | ||| | || Sbjct 589619 AGGCGGAGCACCAAATGCAGGGTGGACTCTTTCTGGATATTATAGTCCGCTAGGGTGCGG 589678 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| || || | ||| || |||| ||||| ||||||| Sbjct 589679 CCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCC 589738 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || ||||| | ||||||||||| || Sbjct 589739 TTGTCCTGGATCTTTGCCTTCACATTGTCTATAGTGTCTGAGGACTCCACCTCCAGAGTG 589798 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| | || || ||||| || ||||| Sbjct 589799 ATCGTCTTGCCCGTGAGTGTCTTAACAAAGATTTGCAT 589836 >seq34 Length=3699824 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||||||||| ||| || |||||||| || || |||||||| || | Sbjct 905044 CCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCA 905103 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||||||||||||| ||||| ||||| | ||| || || | |||| Sbjct 905104 AGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 905163 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||||| || ||| | | | || || ||| || Sbjct 905164 ATACCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCGACT 905223 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | ||| || || || |||||||| Sbjct 905224 TCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 905270 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||||| || ||||| ||||| || | || | || Sbjct 904597 AGACGAAGCACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGG 904656 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || ||||||||||| | ||| ||||||| || | ||| || Sbjct 904657 CCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGGGATGCCTTCT 904716 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | | | || || ||||||||||| || Sbjct 904717 TTGTCCTGAATTTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACCTCCAGGGTG 904776 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || |||||||| || ||||| Sbjct 904777 ATGGTCTTTCCGGTAAGGGTCTTTACAAATATTTGCAT 904814 >seq143 Length=574977 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||| || || ||||||||||| | || | || Sbjct 165592 AGTCGGAGCACCAGATGCAGAGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTGCGG 165651 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || ||||| || || ||||| ||||||| ||||| ||||||| Sbjct 165652 CCGTCTTCGAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCC 165711 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || |||| ||| ||||| | || Sbjct 165712 TTATCTTGGATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCGACCTCGAGGGTG 165771 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | || || ||||| |||||||| Sbjct 165772 ATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 165809 >seq251 Length=123057 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||| || |||||||||||||| | || | || Sbjct 98291 AGTCGGAGCACCAGATGCAGAGTAGACTCCTTCTGAATATTGTAATCTGCAAGGGTGCGG 98350 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || ||||| || || ||||| ||||||| ||||| ||||||| Sbjct 98351 CCGTCTTCGAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCC 98410 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || |||| ||| ||||| | || Sbjct 98411 TTATCTTGGATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCAACCTCGAGGGTG 98470 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || || |||||||| Sbjct 98471 ATTGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 98508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | || || ||| |||||| || || |||||||||| Sbjct 98510 CCACCCCTGAGACGAAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCA 98569 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| ||||||||| ||||| || || | ||| ||||| | ||| Sbjct 98570 AGCGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 98629 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | ||||| | ||| ||| Sbjct 98630 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCTGATGACTCGACC 98689 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | ||| || ||||| |||||||| Sbjct 98690 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 98736 >seq2 Length=5918456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || |||||||| || ||||| ||||| |||| Sbjct 561460 GCCGCCGCGAAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGC 561401 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| || | |||||| || || || ||||| | ||| || |||| || Sbjct 561400 GAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGG 561341 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| || || | | | || || || | ||| || Sbjct 561340 GATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCGAC 561281 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||||| || || || || | || || || ||||||||||| Sbjct 561280 CTCGAGGGTAATAGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 561233 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| || || || || ||||| |||| ||| ||| Sbjct 561678 AGGCGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAGAGTTCTG 561619 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| ||||| ||||||| ||| | ||| ||| Sbjct 561618 CCATCTTCCAACTGCTTGCCTGCAAAAATCAACCGCTGCTGATCCGGGGGGATGCCTTCC 561559 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || || | ||| ||||| | ||| Sbjct 561558 TTGTCCTGGATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCGACCTCGAGGGTA 561499 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || ||||||||||| Sbjct 561498 ATAGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 561461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || |||||||| || || || |||||||| | Sbjct 561232 GCCGCCGCGGAGACGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGC 561173 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || ||| |||| || | |||||| || || || ||||| | ||| ||||| | || Sbjct 561172 GAGTGTTCTCCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGG 561113 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| |||||| | | | || || | || || Sbjct 561112 GATTCCCTCCTTGTCTTGAATCTTGGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAAC 561053 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || || | || || ||||| ||||||||| Sbjct 561052 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATC 561004 >seq300 Length=293291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || |||||||| | || | || |||| || Sbjct 10506 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGGCCGTCTTCG 10565 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || ||||| | ||| ||||||| ||||| ||||||||||| | Sbjct 10566 AGCTGCTTGCCCGCGAAAATCAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGA 10625 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| || | | | | || || | || ||||||| ||| || || || Sbjct 10626 ATCTTTGCTTTGACGTTATCAATTGTATCAGATGATTCAACCTCCAGCGTGATTGTCTTG 10685 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 10686 CCGGTGAGGGTCTTGACGAAGATCTGCAT 10714 >seq53 Length=1478458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||| || || || |||||||||| ||| ||| Sbjct 997422 AGTCGTAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCTG 997363 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || |||| || || || | |||| |||||| Sbjct 997362 CCATCCTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGGAGGAATTCCCTCC 997303 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||||||| | | || || || ||| ||||| | || Sbjct 997302 TTGTCCTGAATCTTAGCTTTTACATTGTCAATAGTGTCAGAGCTCTCGACCTCGAGGGTG 997243 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || |||| |||||| || || || |||||| Sbjct 997242 ATGGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCATC 997204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48551 CCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATC 48610 ||| | |||||| || | ||| ||| || || || || ||||||| || | || | Sbjct 997648 CCGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCC 997589 Query 48611 GTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTT 48670 ||| |||||||||||||| ||||||||||| | ||| || || | ||||| || ||||| Sbjct 997588 GTCCTCCAACTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTT 997529 Query 48671 GTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 ||| |||||| || || | | | || || ||| || |||| || || Sbjct 997528 GTCCTGAATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAAGGTTAT 997469 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || | ||| || || || ||||||||| Sbjct 997468 TGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATC 997432 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| ||| || |||||||| || || || ||||| || | Sbjct 998115 CCGCCACGCAGACGAAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCG 998056 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| || ||||| || || | ||| || || | || Sbjct 998055 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 997996 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||| ||| | | | | || || ||||||| Sbjct 997995 ATCCCTTCCTTGTCCTGAATTTTAGCTTTAACATTATCGATCGTATCAGAGCTCTCCACC 997936 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | || || |||||||||||||| Sbjct 997935 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933440161408