Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq321 428 5e-115 seq8 96.9 4e-15 >seq321 Length=132638 Score = 428 bits (474), Expect = 5e-115 Identities = 475/632 (75%), Gaps = 1/632 (0%) Strand=Plus/Minus Query 162680 TCATC-TCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 ||||| |||||||| | |||||| ||| ||||| ||| | || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798 |||||||||||| || ||||||||||||| || ||||| || |||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGC 162858 | |||||| | | || | | ||| |||||| ||||||||||| || ||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 162859 TTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCT 162918 | ||||||||||||||||| ||||||||| || || || || | || || ||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 162919 GTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATT 162978 || |||||| |||| ||| |||||||||| ||| ||||| | |||||| | || || Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 162979 TCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCC 163038 || |||||||| |||| |||| | || ||||| || |||||||||||||| ||||| || Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098 ||||| ||| | ||||| || ||||||||||| ||||| || || ||||||||||| ||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGT 163158 || | || || ||| | | ||||| ||||| || || | || || || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 163159 TATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGT 163218 || | ||||| ||||| ||||| |||||||| || || ||||||||||| || ||||| Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 163219 CGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCT 163278 || ||||||||||| ||||| |||||||||||| ||||| || |||||||| | ||| Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 163279 GCATTCCCTGTGGTCTGCATCTGGTTCACTGC 163310 || | ||||| || | |||||||||||||| Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 >seq8 Length=3569224 Score = 96.9 bits (106), Expect = 4e-15 Identities = 165/233 (71%), Gaps = 16/233 (7%) Strand=Plus/Plus Query 163028 TAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTG 163087 ||||||| || ||||| ||| | ||||| || ||||||| || || || |||| Sbjct 2145665 TAATGCATCCATTCCACATGTTAGGAGTAGCTAATGTATTC------TCCCTATTCAGTG 2145718 Query 163088 CTATGCACGGTTCTCTT-GTTACTTCTTCTCTTATCAGAGAAACT-ACTGAGCAAGAGTC 163145 ||||||| | || |||| || || ||| | |||||| ||||| | || || | || || Sbjct 2145719 CTATGCATGATT-TCTTGGTAACCTCTAGTTTTATCA-AGAAAATGACAGAAAATGAATC 2145776 Query 163146 ACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG-----CT 163200 || | ||||||| || || ||||| ||||| |||||||| || || | || Sbjct 2145777 TGCTAATGAAGGTTATAGATTTGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCT 2145836 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTC 163253 |||||||| | || | || |||||||| || ||||| |||||||||||| Sbjct 2145837 GCTCATGG-TTGTTCAGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTC 2145888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553078605450240