Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq321 491 5e-134 seq72 87.8 2e-12 seq288 84.2 2e-11 >seq321 Length=132638 Score = 491 bits (544), Expect = 5e-134 Identities = 489/632 (77%), Gaps = 1/632 (0%) Strand=Plus/Minus Query 161057 TCATC-TCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATC 161115 ||||| |||||||| |||| ||| ||||| ||||| ||| |||| |||||||| ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 161116 TGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTG 161175 |||||||||||| | | || || ||| | ||||| || ||||||| |||| |||| Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 161176 TTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 161235 | |||||| | |||| | | ||||||||||||||||||||||||| || |||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 161236 CTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCA 161295 ||||| ||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 161296 GTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATC 161355 || ||| || |||| ||| |||||||||| ||| ||||||| |||||| | || || Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 161356 TCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCC 161415 || ||||| ||||||| |||| |||| ||||| || ||||||||||| || ||||| || Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 161416 TTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGT 161475 ||||| ||| | || ||||| ||||| || |||||||| || |||||||| ||||| ||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 161476 TCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGT 161535 || |||| |||||| || | | |||||||| |||||||| || || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 161536 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGT 161595 |||| ||||||||||| ||||| || ||||| ||||| ||||| || || || || || Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 161596 CGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCT 161655 || |||| |||||||| ||| ||||||||||| || || || |||||||| | ||| Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 161656 GCTTGGCCTGTTGTTGGCATCTGGTTCACTGC 161687 ||||||||||| || || |||||||||||||| Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 >seq72 Length=1168296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||| || ||| |||| ||| || ||| |||| || |||||||||||||| || Sbjct 993159 TACATTCTCGACTCAGCCGAGTCTGCAGGTATCGAGCTGCCCTACTCGTGCCGTGCCGGA 993100 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || ||| | ||||| |||||| | | || || ||||| |||| ||| Sbjct 993099 GCGTGCTCGACCTGTGCTGGAAAAATGGAGTCCGGTTTGTGCGACCAGTCCGACGGATCC 993040 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || || | ||||| |||||| | || ||||||||| | || || || Sbjct 993039 TTCCTCGATGAAGGACAAATGTCAAAGGGTTTCGTACTCACTTGTGTTGCATACCCAACT 992980 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGATGG 158568 || ||||||||| | || ||||||||| || || |||| |||| Sbjct 992979 GCGGACTGTGTGATTCACACGCACAAGGAAGGCGATCTCTATTAATGG 992932 >seq288 Length=94564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 157683 ATTTTTAC--GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGC 157740 ||||||| ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | Sbjct 78228 ATTTTTAAAAGGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCAC 78169 Query 157741 AGGTTCGAATCCTGTCACCCCGACTTAT 157768 ||||| |||||||||| ||| || ||| Sbjct 78168 GGGTTCAAATCCTGTCATCCCTACCTAT 78141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547741065231360