Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq321 325 1e-84 >seq321 Length=132638 Score = 325 bits (360), Expect = 1e-84 Identities = 428/583 (73%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || |||||||||||||| ||||| ||||| | ||||| || |||||||| ||| Sbjct 86442 ACAGGCCAAGCAGCCAAAAAGAAGTGTAGGGAACGAGAGTTGTTGAAACTAGCATATTGG 86501 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||||| || || ||||| || || ||||| ||||| Sbjct 86502 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAAGTTTCTTCCTCTTGA 86561 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT--AAGT-GAG 18203 || ||| | || || | || ||| || || || ||||| || || || | ||| Sbjct 86562 CCGAATCTGTAACCTTCATTAGCAGATTCGTTTTCTGTGGTTTCCCTGATCAAACTAGAG 86621 Query 18204 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 18263 | || |||| || ||||||||| ||||| | || |||||||| || || || Sbjct 86622 GT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACT 86678 Query 18264 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAA 18323 || | ||| ||||| |||||||||||||| ||||| || || |||||||| | |||||| Sbjct 86679 CCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATACAATCATGAAG 86738 Query 18324 TTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGA 18383 ||||||||||| || || | ||||||||||||||| ||||| ||||| || | ||| Sbjct 86739 TTGAAAGTACCTGATATTCCTAAAGGCATACCATCAGAAAAACTTCCTTGACCGATAGGG 86798 Query 18384 TA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCC 18441 || | | ||||| || | || | |||||||| || || || ||||| |||||| ||||| Sbjct 86799 TAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCC 86856 Query 18442 ACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGC 18501 | || |||||||| || | ||||||||||||| | || ||||||||| || | | Sbjct 86857 AAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACAC 86916 Query 18502 CGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGA 18561 | | | ||||| | ||||| |||| ||| || || || || ||||||||||| || | Sbjct 86917 CAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCATTGTATAACCACTCATCAA 86976 Query 18562 GGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 | ||| ||||||||||| |||||||| || | ||| || || Sbjct 86977 CAGATGCTGCTTCCCAGATCGGGTAGAAATGCAAACCTATAGC 87019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151316789972224