Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq321 372 4e-98 seq8 93.3 5e-14 seq43 91.5 2e-13 >seq321 Length=132638 Score = 372 bits (412), Expect = 4e-98 Identities = 433/578 (75%), Gaps = 7/578 (1%) Strand=Plus/Plus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||||||||| || |||||||||||||| || || || ||||||||||| |||||| Sbjct 86478 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 86537 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 || ||||| || ||||||||||| ||||| ||||||| | || |||||| |||| Sbjct 86538 ATATTGTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCGTTTTCT 86597 Query 103523 GTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581 || || || | || | | | | || || || | ||||| |||||||||||||| || || Sbjct 86598 GTGGTTTCCCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGA 86656 Query 103582 ACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641 ||| ||||| || ||||| || || | ||||||||| || ||||| || ||||| || || Sbjct 86657 ACCGCCGAATACACCAGCTACTCCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTC 86716 Query 103642 GGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGA 103701 || ||||| || | |||| ||||||| || || || || || ||||||||| |||| || Sbjct 86717 CGCCTGGAATACAATCATGAAGTTGAAAGTACCTGATATTCCTAAAGGCATACCATCAGA 86776 Query 103702 GAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGC 103761 || |||||||| | ||||||| |||||| || || | ||||| ||||||||||| Sbjct 86777 AAAACTTCCTTGACCGATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 86836 Query 103762 AGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACG 103821 || ||||| ||| ||||| || ||||| ||||||||| | | |||||||||||| Sbjct 86837 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 86896 Query 103822 TCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACC 103881 ||||| || | | |||| | |||||| | || | |||| ||||||| || Sbjct 86897 ACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCC 86956 Query 103882 GTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAAT 103941 || || | ||||||||||| ||||||||||||||| || || ||||| || | ||| || Sbjct 86957 ATTGTATAACCACTCATCAACAGATGCTGCTTCCCAGATCGGGTAGAAATGCAAACCTAT 87016 Query 103942 TGCGTTGGAGGAG--GGAACAACTGCACCAGA-GATGA 103976 || || || || |||| || |||||||| ||||| Sbjct 87017 AGC--TGCAGAAGTAGGAATAATCGCACCAGAGGATGA 87052 >seq8 Length=3569224 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 14/232 (6%) Strand=Plus/Minus Query 103401 GGGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGG--- 103457 ||||||||||||| || ||||| |||||||| || | ||| |||||||||| | Sbjct 2145890 GGGAGTTGTTGAAACTAGCATATTGAAAGATCAATCGGCTGAAC-AACCATGAGCAGAGC 2145832 Query 103458 --CTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTC 103515 ||||||| ||||| || ||||||||||| || || | ||||| | || |||||| Sbjct 2145831 AGCTACGATATTGTAAGTTTCTTCCTCTTGACCAAATCTATAACCTTCATTAGCAGATTC 2145772 Query 103516 AGTTTCAGTC-GTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGA 103574 | |||| ||| | || || | | | || || || | || | ||||||||||||| Sbjct 2145771 ATTTTCTGTCATTTTCTTGATAAAACTA-GAGGTTACCAAGAAATCATGCATAGCACTGA 2145713 Query 103575 ACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCAT 103626 | || || ||| || ||| || || | ||||||||| || ||||| Sbjct 2145712 ATAGGGA------GAATACATTAGCTACTCCTAACATGTGGAATGGATGCAT 2145667 >seq43 Length=1752904 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 102820 AGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGAT--CGTCATCCAGA 102877 ||| ||||| || |||||||| || |||||||| ||| | ||| | || || || Sbjct 1240559 AGTGGGGTACGCGACGCAGGTGAGCACAAAACC--CTTTGACATGAGTCCTTCGTCGAGG 1240502 Query 102878 AAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACAC 102937 |||||| ||| ||||| |||| ||| || || || || |||||||| || || ||| Sbjct 1240501 AAGGATCCATCGGACTGATCAACAGAACCGGACTCGATTTTTCCAGCACAGGTCGAGCAC 1240442 Query 102938 GCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATA 102997 || ||||||||||| || || || || || | || ||| || || | ||| ||||| Sbjct 1240441 GCCCCAGCACGACACGAGTAGGGAAGCTCGAGTCCGGCTGACTCGGCCGAGTCGAGAATG 1240382 Query 102998 TATTGATCATC 103008 || |||||| Sbjct 1240381 TAGCAATCATC 1240371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633506504647680