Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq321 363 2e-95 seq38 93.3 5e-14 seq24 93.3 5e-14 >seq321 Length=132638 Score = 363 bits (402), Expect = 2e-95 Identities = 466/641 (73%), Gaps = 1/641 (0%) Strand=Plus/Plus Query 124211 ATACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGA 124270 ||||| | || || ||||| | || ||| ||||| || | || | |||||||| || Sbjct 86412 ATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCCAAAAAGAAGTGTAGG 86471 Query 124271 CTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCT 124330 | ||||||||||| |||||| |||||||| | || ||||| ||||| || || Sbjct 86472 GAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCA 86531 Query 124331 GCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCT 124390 ||||| || ||||| |||||||| ||||| ||||| | ||||| | || || || Sbjct 86532 GCTACGATATTGTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCG 86591 Query 124391 TGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAAT 124450 | ||||| ||||| ||||| | | ||| || || | ||||||||||| || |||| Sbjct 86592 TTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAAT 86651 Query 124451 AAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTA 124510 | || || ||||| | || ||||||||| ||||||||| |||||||| || ||||| Sbjct 86652 AGGGAACCGCCGAATACACCAGCTACTCCTAACATGTGGAATGGATGCATAAGGATGTTG 86711 Query 124511 TGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCA 124570 ||||| || ||||| || | ||| ||||||||||||||||| || || | ||||||||| Sbjct 86712 TGCTCCGCCTGGAATACAATCATGAAGTTGAAAGTACCTGATATTCCTAAAGGCATACCA 86771 Query 124571 TCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACT 124630 ||||| || || ||||| | ||||| | ||||| ||||| ||||| | || Sbjct 86772 TCAGAAAAACTTCCTTGACCGATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACA 86831 Query 124631 GGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCAC 124690 || |||||||| |||||| |||||||||||||| || | | | | ||||||||| Sbjct 86832 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCAC 86891 Query 124691 TGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGA 124750 | | |||||||| | | ||||| | |||||| | || | | | ||||||| Sbjct 86892 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 86951 Query 124751 CCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGT 124810 || ||||| || ||||| |||||||||| ||||||||||||||| |||||||| || | Sbjct 86952 CCGCCATTGTATAACCACTCATCAACAGATGCTGCTTCCCAGATCGGGTAGAAATGCAAA 87011 Query 124811 CCGATAGCGTTTGATGATGGAACAACTGCACCAGA-GATGA 124850 || ||||| || | |||| || |||||||| ||||| Sbjct 87012 CCTATAGCTGCAGAAGTAGGAATAATCGCACCAGAGGATGA 87052 >seq38 Length=1794542 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | |||||| || || || ||||| Sbjct 122631 AAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATGCCAGGGCCACCTCCACCATG 122690 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 |||||| || |||||||| || | ||| ||||| || |||||||| ||| Sbjct 122691 TGGAATGCAAAATGTCTTGTGGAGATTAAGATGGCAAACATCTGCCCCA 122739 >seq24 Length=2151185 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | |||||| || || || ||||| Sbjct 1517528 AAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATGCCAGGGCCACCTCCACCATG 1517587 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 |||||| || |||||||| || | ||| ||||| || |||||||| ||| Sbjct 1517588 TGGAATGCAAAATGTCTTGTGGAGATTAAGATGGCAAACATCTGCCCCA 1517636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578991915217920