Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq59 104 3e-17 seq27 104 3e-17 seq4 104 3e-17 seq2 100 3e-16 seq8 91.5 2e-13 seq50 86.0 7e-12 >seq59 Length=1347071 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || ||||| || || || | || ||||| || ||||| || |||||||||||||| || Sbjct 1071115 TCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCG 1071056 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||| |||| || || || || ||||| ||||| || || ||| Sbjct 1071055 TTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAAT 1070996 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| ||||| || || || || || ||| Sbjct 1070995 GAACTAATTTCTCGCGACGAAGGACTTCAC 1070966 >seq27 Length=2003651 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || ||||| || ||||| | |||||||| || || || || |||||||||||||| || Sbjct 1228819 TCATTCGCAGAACGCCTCGTCGCGTTTGCTTGCGTAGAAGGCATCTTCTTCTCCGGCTCG 1228760 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||||| || || | ||| |||| || || ||||| ||||| ||||| || ||||| Sbjct 1228759 TTCTGTGCGATCTTCTGGCTGAAAAAACGTGGTCTTATGCCCGGCCTCACATTTTCAAAC 1228700 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| ||||| || || || || || ||| Sbjct 1228699 GAACTAATTTCTCGCGACGAAGGACTTCAC 1228670 >seq4 Length=5414181 Score = 104 bits (114), Expect = 3e-17 Identities = 301/459 (66%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGA-TTGTGGATTTTCTCA 175249 |||||| | || |||||| || |||| | |||| | | | ||||||| || | | Sbjct 2885948 TGATGTAGCTGGAGTTGACGAAGC-AAAGCAGGACTTCATGGAAGTTGTGGAGTTCTTGA 2885890 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 || |||| ||||| | || | |||||| |||||| ||| | ||||| | Sbjct 2885889 AGAAACCAGAGAGGTTCACTGCAGTTGGTGCACGGATCCCGAAAGGTGTTCTTCTTATAG 2885830 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 | || ||||| || |||||| | || ||| || ||||| || || | ||| | Sbjct 2885829 GCCCTCCGGGTACTGGGAAGACCTTGCTTGCCAAGGCAATCGCCGGCGAGGCCGGTGTTC 2885770 Query 175370 CATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 | || || | || | | | ||||| || |||||||| ||||||||||| Sbjct 2885769 CCTTTTTCTCGATTTCAGGTTCTGAATTTGTAGAAATGTTTGTCGGTGTGGGTGCATCGC 2885710 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||||| ||| | | ||| || ||| || || ||||| || |||||| Sbjct 2885709 GAGTTCGTGATCTTTTTAAGAAAGCCAAGGAGAATGCCCCCTGCATTGTGTTTGTTGATG 2885650 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAG 175547 |||||||||| || || | ||| | | || || | | | | || |||||| || || Sbjct 2885649 AGATTGATGCTGTTGGAAGACAAAGAGGAGCAGGGATCGGAGG--AGGAAATGATGAAAG 2885592 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCAT 175607 ||||| || |||||||||| | || || ||||||||||| || | || || | Sbjct 2885591 GGAACAGACCCTTAATCAACTTTTGACTGAAATGGATGGCTTCGAAGGAAATACGGGTGT 2885532 Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | || ||||| || ||||| || | || || ||||| Sbjct 2885531 CATAGTAATTGCAGCTACTAACCGTGCTGACATTCTTGA 2885493 >seq2 Length=5918456 Score = 100 bits (110), Expect = 3e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || ||||| || || || | || ||||| || ||||| || |||||||||||||| || Sbjct 905250 TCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCG 905309 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||| |||| || || || || ||||| ||||| | | || ||| Sbjct 905310 TTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCT-CACATTTCCAAT 905368 Query 65188 GAACTTATTTCCCGAGATGAGG 65209 ||||| ||||| || || |||| Sbjct 905369 GAACTAATTTCTCGCGACGAGG 905390 >seq8 Length=3569224 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| || |||||||| ||||||||||| | ||||| ||||| || | | ||| Sbjct 616567 TTTGTAGAAATGTTTGTCGGTGTGGGTGCATCGCGAGTTCGTGATCTTTTCAAGAAGGCC 616508 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAA--C 175513 || || || || ||||| ||| |||||||||| ||||| || || | ||| Sbjct 616507 AAGGAGAACGCCCCGTGCATTGTGTTCGTTGATGAGATCGATGCTGTTGGAAGACAAAGA 616448 Query 175514 GCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | | || | | | | | || |||||| || | ||||| || |||||||||| | | Sbjct 616447 GGAACGGGGATTGGAGG--AGGAAATGATGAACGGGAACAGACCCTTAATCAACTTTTGA 616390 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCG 175631 | || |||||||||||||| | || ||||| | || ||||| || ||||| || Sbjct 616389 CTGAAATGGATGGCTTTGAAGGAAATACGGGCATCATAGTAATTGCAGCTACTAACCG 616332 >seq50 Length=1516725 Score = 86.0 bits (94), Expect = 7e-12 Identities = 243/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||| || || || |||||| || || ||| || || || ||| Sbjct 758916 CCTGGTACGGGTAAGACACTTCTGGCAAAAGCCATAGCAGGGGAAGCAGGAGTTCCGTTC 758975 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || |||| || | || || |||||||||||||| ||||| ||| ||| || Sbjct 758976 TTCTCTCTTTCTGGATCAGAGTTCGTCGAGATGTTTGTTGGCGTGGGCGCCTCAAGAGTG 759035 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | || | | || |||||| |||||| | ||||| || || ||||| Sbjct 759036 AGGGATTTGTTCAAGAAGGCAAAGGAAAATTCGCCATGTCTAGTCTTTATAGACGAGATA 759095 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| || || | ||| | | | || | | | | || || ||||| |||| | Sbjct 759096 GATGCAGTAGGAAGGCAGAGAGGAACCGGAATTGGAGG--AGGGAACGACGAACGAGAGC 759153 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTG 175609 | ||| | || || || || || || |||||||| || || |||| | | ||||| Sbjct 759154 AGACACTGAACCAGCTGCTGACTGAAATGGATGGGTTCACTGGCAATAATGGAGTCATTG 759213 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 || ||||| || ||||| | || || ||||||| || | ||| | || || Sbjct 759214 TG---ATTGCTGCTACTAACAGACCAGAGATTCTTGATGCAGCATTGCTTAGGCCAGGAA 759270 Query 175670 GTTTTGATCG 175679 | |||||||| Sbjct 759271 GGTTTGATCG 759280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562918420480