Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq321 329 4e-85 seq8 82.4 9e-11 >seq321 Length=132638 Score = 329 bits (364), Expect = 4e-85 Identities = 461/643 (72%), Gaps = 3/643 (0%) Strand=Plus/Plus Query 8052 AATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAG 8111 |||||| | || ||| ||||| | || ||| || || | | ||| | |||||||| || Sbjct 86411 AATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCCAAAAAGAAGTGTAG 86470 Query 8112 ACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAG 8170 | | |||||| |||| | ||||| |||||||| |||| ||||| || ||||||| Sbjct 86471 GGAACGAGAGTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAG 86529 Query 8171 CAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACT 8230 |||| || ||||| || || ||||| |||||||| || | ||||| | || ||| | Sbjct 86530 CAGCTACGATATTGTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATT 86589 Query 8231 CTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGA 8290 | | ||| || || || ||||| | | ||| || || || ||||| ||||||||||||| Sbjct 86590 CGTTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGA 86649 Query 8291 AGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGT 8350 | || || || ||||| | ||| ||||| ||| ||| ||||| ||||||||||| |||| Sbjct 86650 ATAGGGAACCGCCGAATACACCAGCTACTCCTAACATGTGGAATGGATGCATAAGGATGT 86709 Query 8351 TATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTC 8410 | ||||| || |||||||| | ||||||||| || ||||| || || |||| |||||| | Sbjct 86710 TGTGCTCCGCCTGGAATACAATCATGAAGTTGAAAGTACCTGATATTCCTAAAGGCATAC 86769 Query 8411 CATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATA 8470 ||||||| || || ||||| | || || | ||||| || || |||||| | | Sbjct 86770 CATCAGAAAAACTTCCTTGACCGATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAA 86829 Query 8471 CTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCC 8530 | ||||| |||||| ||| ||||| || | |||||| | ||| | | |||| Sbjct 86830 CAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC 86889 Query 8531 ACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATG 8590 ||| | |||||||||| || | |||| | |||||| | | || | | ||| | Sbjct 86890 ACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAG 86949 Query 8591 GACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTA 8650 |||| || || || ||||||||||| | | || |||||||| || || ||||| || | Sbjct 86950 GACCGCCATTGTATAACCACTCATCAACAGATGCTGCTTCCCAGATCGGGTAGAAATGCA 87009 Query 8651 ATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGA-GATGA 8692 | || ||||| |||| |||| | |||||||| ||||| Sbjct 87010 AACCTATAGCTGCAGAAGTAGGAATAATCGCACCAGAGGATGA 87052 >seq8 Length=3569224 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/228 (69%), Gaps = 14/228 (6%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAG-----C 8174 |||||| |||| | ||||| || ||||| |||| | || | |||||||||| | Sbjct 2145886 GTTGTTGAAACTA-GCATATTGAAAGATCAATCGGCTGAACAA-CCATGAGCAGAGCAGC 2145829 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 || ||||| || || ||||| ||||||||||| ||||||| | || ||| || | Sbjct 2145828 TACGATATTGTAAGTTTCTTCCTCTTGACCAAATCTATAACCTTCATTAGCAGATTCATT 2145769 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || | | |||| | | ||| || || || || | |||||||||||||| || Sbjct 2145768 TTCTGTCATTTTCTTGATAAAACTAGAGGTTACCAAGAAATCATGCATAGCACTGAATAG 2145709 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCAT 8342 || ||| | | ||||| ||| ||| ||||| |||||||| Sbjct 2145708 GGA------GAATACATTAGCTACTCCTAACATGTGGAATGGATGCAT 2145667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615855502341120