Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq321 320 5e-83 >seq321 Length=132638 Score = 320 bits (354), Expect = 5e-83 Identities = 426/589 (72%), Gaps = 2/589 (0%) Strand=Plus/Minus Query 42514 CATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCT 42573 ||||| || ||||||||||||| | |||| || ||| | ||||||||||| ||| Sbjct 87007 CATTTCTACCCGATCTGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCT 86948 Query 42574 TATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGG 42633 ||| | || | || | |||||| | | ||| | | |||| |||| || || ||| Sbjct 86947 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 86888 Query 42634 GAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTG 42693 |||||| | ||| || || ||| | || ||||| |||||| || || || ||||| Sbjct 86887 GAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 86828 Query 42694 GCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGA 42753 || || || ||||| || ||| | |||| || | || ||||| |||||| ||||| Sbjct 86827 GCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGT 86768 Query 42754 ATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAAC 42813 |||||| | || || || ||||| |||||||||||| | || |||||||| || || ||| Sbjct 86767 ATGCCTTTAGGAATATCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAAC 86708 Query 42814 ATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTC 42873 || ||||||||||| ||||| ||| | || || || || ||||| || || || | ||| Sbjct 86707 ATCCTTATGCATCCATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTC 86648 Query 42874 TCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA 42933 |||||||||||| | || |||||| | | | | ||||| || ||||||||| Sbjct 86647 AGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAA 86588 Query 42934 AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCG 42993 ||| | || |||| |||||||||||||| || ||||| || || || || || Sbjct 86587 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCT 86528 Query 42994 CATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTT 43052 |||||||| ||||| || | |||||||||||||| | |||| || || ||| || | Sbjct 86527 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCCCT 86469 Query 43053 GCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCT 43101 ||||||||| | || |||||||| || || || || ||||||||| || Sbjct 86468 ACACTTCTTTTTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 86420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143531272811008