Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq321 293 7e-75 >seq321 Length=132638 Score = 293 bits (324), Expect = 7e-75 Identities = 404/562 (72%), Gaps = 6/562 (1%) Strand=Plus/Plus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | | |||||||||||| | ||| |||||||| ||||||||| || || | Sbjct 86449 AAGCAGCCAAAAAGAAGTGTAGGGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCA 86508 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || ||||||||||| || ||||| || | || ||||| || Sbjct 86509 ATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAAGTTTCTTCCTCTTGACCGAATC 86568 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAA 40908 | || || | || ||||| |||| ||||| |||| || | | |||| || Sbjct 86569 TGTAACCTTCATTAGCAGATTCGTTTTCTGTGGTTTCCCTGATCAAACTAGAGGT--TAC 86626 Query 40909 CAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCA 40968 ||||| || ||||||||| || | | ||| || || || || || || || | || Sbjct 86627 CAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACTCCTAACA 86685 Query 40969 TATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATG 41028 | |||||||| ||||| || |||||||| || || ||||| |||| |||||||||||| | Sbjct 86686 TGTGGAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATACAATCATGAAGTTGAAAG 86745 Query 41029 TTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTA 41088 | || ||||||||||||||||||||||| ||| || ||||||| || || | | Sbjct 86746 TACCTGATATTCCTAAAGGCATACCATCAGAAAAACTTCCTTGACCGATAGGGTAGATCA 86805 Query 41089 AGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCA 41148 |||| ||||| ||| |||| | ||||||| ||||| ||| ||||| || | || Sbjct 86806 AGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCA 86865 Query 41149 TACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAA 41208 |||| || | | | ||||||||||| | ||| ||| ||||| || | ||| | Sbjct 86866 TACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 86925 Query 41209 AGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGG 41268 |||| | ||||| |||| ||| || ||||| ||||||| |||||| || | | | | Sbjct 86926 AGTGTAGAACAATTAGTTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCTG 86985 Query 41269 CTTCCCAGATTGGGTAGAAATG 41290 |||||||||| ||||||||||| Sbjct 86986 CTTCCCAGATCGGGTAGAAATG 87007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700871006464