Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq321 426 2e-114 seq8 102 9e-17 >seq321 Length=132638 Score = 426 bits (472), Expect = 2e-114 Identities = 470/626 (75%), Gaps = 0/626 (0%) Strand=Plus/Plus Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592 |||||||||||||| | || ||||| | ||||| | |||||||| || | ||| Sbjct 86421 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCCAAAAAGAAGTGTAGGGAACGAGAG 86480 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652 ||||||||| ||||| ||||||||||| || || || || ||||||||||| || || Sbjct 86481 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 86540 Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712 |||||||| ||||| ||||| ||||| ||||||| | || || || | || || Sbjct 86541 TTGTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCGTTTTCTGTG 86600 Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772 ||||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| Sbjct 86601 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 86660 Query 67773 CCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCT 67832 ||||||||||| |||||||| | ||| |||||||| |||||||||||||||||||| || Sbjct 86661 CCGAATACACCAGCTACTCCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCCGCC 86720 Query 67833 TGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAA 67892 ||||| || | |||| |||| |||||||| || || || | |||||| | ||||| ||| Sbjct 86721 TGGAATACAATCATGAAGTTGAAAGTACCTGATATTCCTAAAGGCATACCATCAGAAAAA 86780 Query 67893 GAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAG 67952 |||||||||| ||| |||| |||||| ||||| || || | || ||||| || Sbjct 86781 CTTCCTTGACCGATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 86840 Query 67953 TATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCA 68012 ||||| ||| ||||||||||||||||| |||||| || ||||||||||| |||||| Sbjct 86841 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 86900 Query 68013 CAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTA 68072 ||| | | || | | |||||| | || | |||| |||| || ||||| Sbjct 86901 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCATTG 86960 Query 68073 TACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCG 68132 || ||||||||||| | || ||||||||||||||| || ||||| || | ||| || || Sbjct 86961 TATAACCACTCATCAACAGATGCTGCTTCCCAGATCGGGTAGAAATGCAAACCTATAGCT 87020 Query 68133 TTTGAACTAGGAACAACAGCACCAGA 68158 ||| |||||| || |||||||| Sbjct 87021 GCAGAAGTAGGAATAATCGCACCAGA 87046 >seq8 Length=3569224 Score = 102 bits (112), Expect = 9e-17 Identities = 165/231 (71%), Gaps = 16/231 (7%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAG----- 67644 |||||||||||| ||||| || |||||||| || | ||| | |||||||||| Sbjct 2145888 GAGTTGTTGAAACTAGCATATTGAAAGATCAATCGGCTGAACAA-CCATGAGCAGAGCAG 2145830 Query 67645 CAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTT 67704 | || || |||||||| ||||| ||||| || || | ||||| | || || || | Sbjct 2145829 CTACGATATTGTAAGTTTCTTCCTCTTGACCAAATCTATAACCTTCATTAGCAGATTCAT 2145770 Query 67705 GCTCAGT-AGTTTCTCTGATAAGAGAAGAAGTAAC-AAGAGAACCGTGCATAGCACTAAA 67762 || || | ||||| |||||| | ||| || || |||| || | ||||||||||| || Sbjct 2145769 TTTCTGTCATTTTCT-TGATAAAACTAGAGGTTACCAAGA-AATCATGCATAGCACTGAA 2145712 Query 67763 GAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCAT 67813 || || ||||||| |||||||| | ||| |||||||| ||||| Sbjct 2145711 TAGGGA------GAATACATTAGCTACTCCTAACATGTGGAATGGATGCAT 2145667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566940850191360