Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq321 453 1e-122 seq14 91.5 2e-13 seq12 91.5 2e-13 seq188 86.0 7e-12 >seq321 Length=132638 Score = 453 bits (502), Expect = 1e-122 Identities = 486/641 (76%), Gaps = 1/641 (0%) Strand=Plus/Plus Query 68000 TGCT-AACACCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAG 68058 |||| || ||| | ||||||||||||||||| || |||||||| ||||| | |||||| Sbjct 86406 TGCTCAATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCCAAAAAGAAG 86465 Query 68059 TGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCA 68118 || || ||||| ||||||||||| ||||| |||||||||| || || || || ||| Sbjct 86466 TGTAGGGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCA 86525 Query 68119 TGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGG 68178 || ||||| || || |||||||| ||||| ||||||||||| ||||||| | || Sbjct 86526 TGAGCAGCTACGATATTGTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCA 86585 Query 68179 GACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCA 68238 || || |||| |||||||| | | || ||| || |||| |||||||||||| ||| Sbjct 86586 GATTCGTTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCA 86645 Query 68239 CTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGG 68298 ||||| || || || || ||||| ||||| || || | ||| ||||| || ||||| ||| Sbjct 86646 CTGAATAGGGAACCGCCGAATACACCAGCTACTCCTAACATGTGGAATGGATGCATAAGG 86705 Query 68299 ATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGC 68358 ||||||||||| || ||||| || | |||| ||||||||||||| || || || | |||| Sbjct 86706 ATGTTGTGCTCCGCCTGGAATACAATCATGAAGTTGAAAGTACCTGATATTCCTAAAGGC 86765 Query 68359 ATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCT 68418 || | ||||| || |||||||||| ||| |||| || ||| || || | || ||| Sbjct 86766 ATACCATCAGAAAAACTTCCTTGACCGATAGGGTAGATCAAGAAAACAGCAGTAGCAGCT 86825 Query 68419 GCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGT 68478 |||||||| || || ||||||||| ||||||||||||||||| ||||| | |||| Sbjct 86826 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGT 86885 Query 68479 TCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGG 68538 ||||| ||||| |||||||| | | ||||| | |||||| | | | |||| Sbjct 86886 TCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCA 86945 Query 68539 AAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAG 68598 ||||||| |||||||| ||||||||||||| | |||||||||||| || || || || Sbjct 86946 TAAGGACCGCCATTGTATAACCACTCATCAACAGATGCTGCTTCCCAGATCGGGTAGAAA 87005 Query 68599 TGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGA 68639 || | ||| || || ||| |||||| || |||||||| Sbjct 87006 TGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCACCAGA 87046 >seq14 Length=2986515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| || Sbjct 2666994 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 2667051 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 2667052 TCTACCACTGAGCTACTGAGGA 2667073 >seq12 Length=3822408 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||| || ||| || Sbjct 2257572 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAATTAATAGCCGACCGC 2257629 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 2257630 TCTACCACTGAGCTACTGAGGA 2257651 >seq188 Length=392610 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| ||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 344742 CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 344801 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 344802 AGCTACTGAGGA 344813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572047992990720