Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq300 91.5 3e-13 seq34 89.7 9e-13 seq2 89.7 9e-13 seq32 87.8 3e-12 >seq300 Length=293291 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | || || || || || | || | ||| || || || ||||| Sbjct 10713 ATACCACCCCTGAGGCGGAGGACAAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCC 10772 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | ||| || || || || || || || || | || || ||||| ||| Sbjct 10773 GCGAGCGTGCGTCCATCCTCCAACTGCTTACCAGCGAAGATGAGCCTTTGCTGATCTGGA 10832 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || || || | || | || |||||||||||||||||| Sbjct 10833 GGGATTCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCGGAAGACTCG 10892 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || ||||| || ||||| || ||||| Sbjct 10893 ACCTCGAGGGTGATGGTTTTCCCAGTGAGCGTCTTCACAAAGATCTGCAT 10942 >seq34 Length=3699824 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || ||||| |||||||| | ||| ||| || ||| || ||||||| Sbjct 904588 CCACCACGCAGACGAAGCACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGCA 904647 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | || || | || || || ||||| || | ||||| ||||| ||||| Sbjct 904648 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGGG 904707 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||| || || ||||| | || | ||| || || || || ||| || Sbjct 904708 ATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACC 904767 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||||||||||||||| Sbjct 904768 TCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTACAAATATTTGCAT 904814 >seq2 Length=5918456 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||||| | ||||| ||| || || || || || |||||||| || | | Sbjct 561870 ATGTTATAGTCGGCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAAATCAACCGC 561811 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || || || || || || || || || | || | || || || Sbjct 561810 TGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTG 561751 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||||||||||||| || || || ||||| || || || || || || || || |||||| Sbjct 561750 TCGGAAGACTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTGC 561691 Query 193359 AT 193360 || Sbjct 561690 AT 561689 >seq32 Length=1954954 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| |||||||| || | ||||| ||||| ||||| || || || || || || || Sbjct 589919 TGTTTGCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATC 589978 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| || ||| ||||| ||||||||||| || | || || || || || Sbjct 589979 TTCGCCTTTACGTTGTCAATCGTATCTGAAGACTCAACCTCCAAGGTGATCGTCTTCCCA 590038 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 590039 GTGAGTGTCTTGACAAAGATTTGCAT 590064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899644323870720