Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq53 102 1e-16 seq10 89.7 8e-13 >seq53 Length=1478458 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||| || || || || || | || ||||| ||| Sbjct 997205 ATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGAGAGCTCT 997264 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| ||| || || || || || || || |||||||| || Sbjct 997265 GACACTATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 997324 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||||| ||||||||||| ||| |||||| || | ||||| || Sbjct 997325 CAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCTAGCTGATTACAAC 997384 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || ||| | || |||||| | ||| || || Sbjct 997385 ATCCAGAAGGAGTCTACTCTTCATCTGGTGCTACGA 997420 >seq10 Length=3646474 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || || || ||||| ||||||||||| || |||||| |||| | ||| || |||||| | Sbjct 674664 CAGGACAAGGAAGGTATACCTCCAGATCAGCAAAGACTGATCTTTGCTGGAAAGCAGTTG 674605 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 |||||| |||| | | ||||||||||| || ||| ||| | || ||||| | || Sbjct 674604 GAAGATGGACGAACCCTTGCTGATTATAATAT-TCAAAAGGAGTCAACACTTCACCTTGT 674546 Query 156032 GTTAAGATTAAGAGGCGG 156049 |||||| ||||||| || Sbjct 674545 CTTAAGACTAAGAGGTGG 674528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731863803033600