Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq32 95.1 2e-14 seq10 91.5 3e-13 seq2 91.5 3e-13 seq81 87.8 4e-12 seq251 86.0 1e-11 >seq32 Length=1954954 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | || || | || ||||| | || | |||||| ||||||||| || | | Sbjct 589610 CCACCACGGAGGCGGAGCACCAAATGCAGGGTGGACTCTTTCTGGATATTATAGTCCGCT 589669 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || ||||||||||| | ||||| || || || || Sbjct 589670 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 589729 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || || || || ||||| ||||| ||||| || || || Sbjct 589730 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCTATAGTGTCTGAGGACTCCACC 589789 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || || || | ||| |||| ||| || ||||| Sbjct 589790 TCCAGAGTGATCGTCTTGCCCGTGAGTGTCTTAACAAAGATTTGCAT 589836 >seq10 Length=3646474 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATA 192362 ||| | |||||||| || | ||| || | || | || | ||| ||| || |||||||| Sbjct 674522 ATAGTGCCACCTCTTAGTCTTAAGACAAGGTGAAGTGTTGACTCCTTTTGA-ATATTATA 674580 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||| | |||||| |||| ||||| || || ||||||||||| | ||| || ||||| Sbjct 674581 ATCAGCAAGGGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTTTGCTGATC 674640 Query 192423 AGGTGGTATTCCTTCTTTATCTTG 192446 || ||||| ||||| || || || Sbjct 674641 TGGAGGTATACCTTCCTTGTCCTG 674664 >seq2 Length=5918456 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || || | || || ||| |||| || | || || |||||||| || | || Sbjct 562099 GATATTGTAGTCTGCTAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAATATAAGCCT 562040 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || || || ||||| ||||| || || ||||| || | Sbjct 562039 CTGCTGGTCCGGGGGGATACCCTCCTTATCCTGTATCTTCGCCTTCACATTGTCGATCGT 561980 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| |||||||| || |||||||||||||| || || || | || || | ||| || || Sbjct 561979 ATCGGACGATTCAACCTCTAGAGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAAATTTG 561920 Query 192534 CAT 192536 ||| Sbjct 561919 CAT 561917 >seq81 Length=1043490 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | |||||||| || | || || | || | || | |||||| ||||||||| Sbjct 708352 ATAGTTCCACCTCTGAGTCTCAAAACCAGGTGAAGTGTTGACTCTTTCTGAATATTATAA 708293 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 |||| | |||||| |||| |||||||| || || |||||||||| | ||| ||||| Sbjct 708292 TCAGCAAGGGTTCGTCCATCCTCCAATTGCTTCCCGGCAAAGATTAGCCGCTGCTGATCG 708233 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || ||||| ||||| || || || Sbjct 708232 GGAGGTATACCTTCCTTGTCCTG 708210 >seq251 Length=123057 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | || | || | |||||| ||| || |||||| Sbjct 98507 ATTCCACCCCTGAGACGAAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCA 98566 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || |||||||||||||| | ||||| ||||| || Sbjct 98567 GCAAGCGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGG 98626 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || || || || | |||||| || || Sbjct 98627 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCTGATGACTCG 98686 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| |||||||| Sbjct 98687 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 98736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984468698169600