Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq53 104 4e-17 seq34 98.7 2e-15 seq2 95.1 2e-14 >seq53 Length=1478458 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | ||| ||| || ||| |||||||| Sbjct 997890 ATACCACCACGGAGACGAAGCACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCA 997831 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || | || |||| ||| || ||||||||||||| ||||| ||||| || Sbjct 997830 GCTAGAGTGCGGCCATCTTCCAGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGG 997771 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || ||||| || |||||| || ||||| || || Sbjct 997770 GGAATACCTTCCTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCCGAACTCTCC 997711 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || ||||| | || || | || |||||||| Sbjct 997710 ACCTCAAGAGTGATTGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 997661 >seq34 Length=3699824 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||||||| |||||||||||||| | ||||| ||||| || || || ||||| | Sbjct 904886 CGTCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGGGGAATACCTTCCT 904945 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || ||||| || || ||| |||||||| || || ||||| ||||| | Sbjct 904946 TGTCCTGAATTTTGGCCTTCACGTTATCGATAGTATCCGAACTCTCAACTTCAAGAGTGA 905005 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || ||||| | || || | ||| |||||||| Sbjct 905006 TCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 905042 >seq2 Length=5918456 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || |||| || || ||| | || || | || || |||||||| || | ||| Sbjct 562098 ATATTGTAGTCTGCTAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAATATAAGCCTC 562039 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || || || || ||||| ||||| || || ||||| || ||| Sbjct 562038 TGCTGGTCCGGGGGGATACCCTCCTTATCCTGTATCTTCGCCTTCACATTGTCGATCGTA 561979 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || |||||||| || |||||||||||||| || || || | || || | || || ||| Sbjct 561978 TCGGACGATTCAACCTCTAGAGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGC 561919 Query 172068 AT 172069 || Sbjct 561918 AT 561917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905125862476800