Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 134 4e-26 seq4 109 2e-18 seq20 86.0 2e-11 >seq8 Length=3569224 Score = 134 bits (148), Expect = 4e-26 Identities = 235/340 (69%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || || |||||| | ||| ||||| ||||| || | | ||| || Sbjct 2671513 TTTCTAACTGTACCATCATATTTGACCATTATGTCCTCCATGGCTTTTACAAGACGCCGT 2671572 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || ||||| || ||| || || || || || |||||||||||||| | ||||||||| Sbjct 2671573 TGGATATACCCGGTTTCCGAAGTCTTAACTGCAGTATCAATTAGACCTTCTCGACCACCC 2671632 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || ||||| ||||| | |||| || || || | || | ||| |||| || || Sbjct 2671633 ATGGCATGAAAGAAGAATTCTTGTGGGGTTAAACCACGAAGGTAAGAGTTCTCCACAAAT 2671692 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT-- 302776 ||||| || || || ||| |||||||| || ||||| |||| | || Sbjct 2671693 CCACGACTTTCAGGTCCATAGTCATCTTTGGTAAAATGAGGCAGTGTCCGA--CCAATGA 2671750 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || | || ||||||||||| |||||||||||||| |||| || | | ||||||||| Sbjct 2671751 ATCCAAAAGGTATACGCTTTCCTTCAACGTTCTGCTGACCCACACAAGCAGTCATCTGCG 2671810 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | || || | | ||| ||||| || |||||| | ||||| Sbjct 2671811 AGATGTTGATAAAACTTCCCTTTGATCCAGCAGTAACCAT 2671850 Score = 114 bits (126), Expect = 4e-20 Identities = 291/428 (68%), Gaps = 15/428 (4%) Strand=Plus/Plus Query 288932 TTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCA 288990 ||| ||| ||| |||||||| || |||| ||||||||| || ||||||| ||||||| Sbjct 616365 TTTCCTTCAAAGCCATCCATTTCAGTCAAAAGTTGATTAAGGGTCTGTTCCCGTTCATCA 616424 Query 288991 TTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCA 289050 ||| |||| |||| |||| || ||| || | || ||||||||||| || || ||| Sbjct 616425 TTTCCTCCTCC--AATC-CCCGT-TC-CTCTTTGTCTT-CCAACAGCATCGATCTCATCA 616478 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGG 289108 | ||| | | ||||| | || | | || | || ||| | || | || || | Sbjct 616479 ACGAACACAATGCACGGGGCGTTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACTCGCG 616536 Query 289109 ATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTT 289167 |||| || | ||| ||| |||||||||||||||||||| |||| | | || | |||| Sbjct 616537 ATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCGGA-AATCGAGAAAAATGGA 616595 Query 289168 ACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCC 289227 || || || || || | ||| | || || | ||||| || |||||||| || || Sbjct 616596 ACGCCGGCCTCACCCGCGATCGCCTTGGCTAGCAAAGTCTTCCCAGTTCCAGGAGG-GCC 616654 Query 289228 TCTAA-TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTT 289286 | ||| ||||| || || || | ||| || | | | || |||| || | || Sbjct 616655 TATAAGAAGAACACCTTTCGGGATGCGTGCACCTACTGCGGTGAATCTCTCGGGTTTTTT 616714 Query 289287 TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGC 289346 | || || || | |||| || || | |||||| ||||| ||| ||||||||| | Sbjct 616715 CAGGAACTCAACGACTTCCATAAAGTCCTGTTTTGCTTCATCGACTCCGGCTACATCATC 616774 Query 289347 AAAAGTAA 289354 || |||| Sbjct 616775 GAACGTAA 616782 >seq4 Length=5414181 Score = 109 bits (120), Expect = 2e-18 Identities = 282/420 (67%), Gaps = 20/420 (5%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || |||| ||||||||| || |||||||||||||||||| ||| Sbjct 2885550 AAGCCATCCATTTCAGTCAAAAGTTGATTAAGGGTCTGTTCCCTTTCATCATTT---CCT 2885606 Query 289000 CTTGAATCACCCGAATC--GCTC--CtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 | | |||| | |||| |||| | | |||||||||||||| || |||| || Sbjct 2885607 CCT-------CCGATCCCTGCTCCTCTTTGTCTTCCAACAGCATCAATCTCATCAACAAA 2885659 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | || || | ||| | | || | ||| | || | || || ||||| || Sbjct 2885660 CACAATGCAGGGGGCATTCTCCTTGGCTTTCTTAAAAAGATCACGAACTCGCGATGCACC 2885719 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174 | ||| ||| |||||||||||||||||||| | || | | || | || | ||| | Sbjct 2885720 CACACCGACAAACATTTCTACAAATTCAGAACCTGA-AATCGAGAAAAAGGGAACACCGG 2885778 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA-T 289233 | ||||| || | |||| | || || | ||||| || || || || || ||| ||| Sbjct 2885779 CCTCGCCGGCGATTGCCTTGGCAAGCAAGGTCTTCCCAGTACCCGGAGG-GCCTATAAGA 2885837 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||||| || || || | ||| ||| | | | | |||| || |||| || || Sbjct 2885838 AGAACACCTTTCGGGATCCGTGCACCAACTGCAGTGAACCTCTCTGGTTTCTTCAAGAAC 2885897 Query 289294 TCTACAATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| |||| | ||| || | ||||| || ||| ||| ||||||||| | || || Sbjct 2885898 TCCACAACTTCCATGAAG-TCCTGCTTTGCTTCGTCAACTCCAGCTACATCATCGAATGT 2885956 >seq20 Length=2314553 Score = 86.0 bits (94), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || | ||||||| | | ||| |||||||| | || |||||| | ||| |||| Sbjct 1635813 GCTATTAAACCACACCTCTCACAGACATGGACCCGATATGCATCACTTTGATCAAATAGA 1635872 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || ||||| || | | |||||||||| ||||||||| ||||||||||| || || Sbjct 1635873 CGTTCCTTGAGAAAATGTGCAGCACCGTGTGCAATCATACAGTCACGCTCCATCTCTCCA 1635932 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || || | || || || || | || || || |||||||| | ||| || Sbjct 1635933 AAGCGCAATCCTCCGTCTCGTGACCGCCCTTCTGCAGGCTGTCTAGTAAG 1635982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800703533952