Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq59 145 9e-29 seq2 145 9e-29 seq27 129 7e-24 seq14 95.1 1e-13 >seq59 Length=1347071 Score = 145 bits (160), Expect = 9e-29 Identities = 154/199 (77%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 869687 ACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCG 869746 || || || ||||||||||||| ||||| ||||||||| |||||||| ||| |||| Sbjct 1071882 ACCTGAACTTCCTTCATGAACCTACCGGCGAGGTTCTCGAGGACGATGCCATCGGAGGCG 1071941 Query 869747 GCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC---- 869802 ||||| || || || |||| | ||||| ||||||||||||||| |||| ||| | Sbjct 1071942 GCGAAGAAGGCGAGCACGTAGGTTATAAAATGGCGCTCGTCGTCGGTGAG-GACGCCGGT 1072000 Query 869803 CCAGTGGACGGTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGG 869861 ||||||||| | | ||| | || |||||||| |||||||||| ||| ||||| | Sbjct 1072001 CCAGTGGACCAAATCCTGCG-ACAAATCGACCTCCTCCGCGGTCCAGAACGACGCCTCCG 1072059 Query 869862 CCTTTTTGTACATCTCCCA 869880 |||| |||||||||||||| Sbjct 1072060 CCTTCTTGTACATCTCCCA 1072078 Score = 116 bits (128), Expect = 5e-20 Identities = 185/263 (70%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||||||| || | ||| ||| ||| | |||||||||||| || ||||| || Sbjct 1070973 CCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCCGCGTTTT 1071032 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||||||||| |||||||| ||| ||||| |||||||| || ||| ||||| Sbjct 1071033 TTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAA 1071092 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| ||| || || || || | || | | | | | ||||||| | |||||| Sbjct 1071093 GCGACGAGACGATCCGCGAA--AGAAGAATCACACGAT-TCAATCCACTCGAGCGCCCAC 1071149 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | ||| || || |||| || |||||||| ||||| ||||| | |||| ||| Sbjct 1071150 TTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCG 1071209 Query 869420 GCCGGGTCCTTGACATAGGTGTC 869442 | | ||| |||| ||| || || Sbjct 1071210 TCGGAGTCTTTGATATAAGTTTC 1071232 >seq2 Length=5918456 Score = 145 bits (160), Expect = 9e-29 Identities = 154/199 (77%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 869687 ACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCG 869746 || || || ||||||||||||| ||||| ||||||||| |||||||| ||| |||| Sbjct 904495 ACCTGAACTTCCTTCATGAACCTACCGGCGAGGTTCTCGAGGACGATGCCATCGGAGGCG 904436 Query 869747 GCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC---- 869802 ||||| || || || |||| | ||||| ||||||||||||||| |||| ||| | Sbjct 904435 GCGAAGAAGGCGAGCACGTAGGTTATAAAATGGCGCTCGTCGTCGGTGAG-GACGCCGGT 904377 Query 869803 CCAGTGGACGGTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGG 869861 ||||||||| | | ||| | || |||||||| |||||||||| ||| ||||| | Sbjct 904376 CCAGTGGACCAAATCCTGCG-ACAAATCGACCTCCTCCGCGGTCCAGAACGACGCCTCCG 904318 Query 869862 CCTTTTTGTACATCTCCCA 869880 |||| |||||||||||||| Sbjct 904317 CCTTCTTGTACATCTCCCA 904299 Score = 104 bits (114), Expect = 3e-16 Identities = 181/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||||||| || | ||| ||| ||| | |||||||||||| || ||||| || || Sbjct 905388 TCGTCGCGAGAAATTAGTTCATTGG-AAATGTGAGGCCGGGCATAAGCCCGCGTTTTTTC 905330 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 869302 ||||||||||| |||||||| ||| ||||| |||||||| || ||| ||||| || Sbjct 905329 AGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAGCG 905270 Query 869303 ATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCG 869362 | ||| || || || || | || | | | | | ||||||| | |||||| | | Sbjct 905269 ACGAGACGATCCGCGAA--AGAAGAATCACACGAT-TCAATCCACTCGAGCGCCCACTTG 905213 Query 869363 GCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCC 869422 || || || |||| || |||||||| ||||| ||||| | |||| ||| | Sbjct 905212 GCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCGTCG 905153 Query 869423 GGGTCCTTGACATAGGTGTC 869442 | || |||| ||| || || Sbjct 905152 GAATCTTTGATATAAGTTTC 905133 >seq27 Length=2003651 Score = 129 bits (142), Expect = 7e-24 Identities = 165/223 (74%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 869687 ACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCG 869746 || || || ||||||||||| | ||||| ||||||||| |||||||||||| |||| Sbjct 1229141 ACCTGTACTTCCTTCATGAATCTACCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCG 1229200 Query 869747 GCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC---- 869802 ||||| || || || || | | ||||| |||||||||||| || |||| ||| | Sbjct 1229201 GCGAAGAAGGCGAGCACATAGGTTATAAAATGGCGCTCGTCGGCGGTGAG-GACGCCGGT 1229259 Query 869803 CCAGTGGACGGTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGG 869861 ||||||||| | | ||| | || |||||||| || ||||||| || ||||| | Sbjct 1229260 CCAGTGGACCAAATCCTGCG-ACAAATCGACCTCCTCCGCCGTCCAGAAAGACGCCTCCG 1229318 Query 869862 CCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||| |||||||| ||||| | || | |||| ||| ||||| Sbjct 1229319 CCTTCTTGTACATTTCCCAAATTTCCGGGTACTTGATCGGGAA 1229361 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||||||| || | |||||| ||| | |||||||||||| || || || || Sbjct 1228677 CCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGGGCATAAGACCACGTTTT 1228736 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| || ||||| ||| ||||| |||||||| || ||| ||||| Sbjct 1228737 TTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCAAGCAAAC 1228796 Query 869300 CCGATGAGCCGCTCGGCAAA 869319 ||| ||| || || || || Sbjct 1228797 GCGACGAGGCGTTCTGCGAA 1228816 >seq14 Length=2986515 Score = 95.1 bits (104), Expect = 1e-13 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||| ||| ||| || || || ||| || ||||||| || Sbjct 1010324 GCGGCCAACTACCTCGACATGAAGGGTCTCCTAGACCTGACCTGCCAGACTGTGGCTGAC 1010383 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| ||| | || || |||||||| ||||| || |||||||| Sbjct 1010384 ATGATCAAGGGAAAGACCCCTGAAGAGATCCGAAAGACTTTCAACATCAA 1010433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107065670044032