Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq53 105 6e-18 seq251 98.7 8e-16 >seq53 Length=1478458 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 |||||||| || || |||||| | || || || ||||| ||| |||| || |||| || Sbjct 997205 ATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGAGAGCTCT 997264 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | |||||| |||||| ||||| || || | || || Sbjct 997265 GAC---ACTATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCAGAC 997321 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||||| |||| || || || ||||| ||||||| |||||| | || |||||| Sbjct 997322 CAGCAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCTAGCTGATTAC 997381 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || ||||| | || ||||| || |||| || || || Sbjct 997382 AACATCCAGAAGGAGTCTACTCTTCATCTGGTGCTACGACTTCGCGGTGG 997431 >seq251 Length=123057 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | |||||||| ||||| ||| |||| ||| | Sbjct 98736 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCA 98677 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| ||||| || ||| | ||| ||||| Sbjct 98676 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 98617 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||| ||||||||||||| | | || | || ||||||||| Sbjct 98616 CAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTTGCTGATTACAAC 98557 Query 110453 ATTCAAAAAGAATCTAC 110469 || || ||||| || || Sbjct 98556 ATCCAGAAAGAGTCCAC 98540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837091769728