Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq59 152 8e-31 seq2 152 8e-31 seq27 143 4e-28 seq20 107 3e-17 >seq59 Length=1347071 Score = 152 bits (168), Expect = 8e-31 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 || || || ||||||||||| | ||||| |||||||| |||||||| ||| |||| Sbjct 1071882 ACCTGAACTTCCTTCATGAACCTACCGGCGAGGTTCTCGAGGACGATGCCATCGGAGGCG 1071941 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG--CG-AGACC 796275 ||||| |||||||| |||| | ||||| || |||||||||||| |||| || | | Sbjct 1071942 GCGAAGAAGGCGAGCACGTAGGTTATAAAATGGCGCTCGTCGTCGGTGAGGACGCCGGTC 1072001 Query 796276 CAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGC 796334 ||||||||| | | ||| | | ||||||||||| |||||||| || || ||||| || Sbjct 1072002 CAGTGGACCAAATCCTGCGAC-AAATCGACCTCCTCCGCGGTCCAGAACGACGCCTCCGC 1072060 Query 796335 CTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| |||||||||||||| ||| |||| ||| ||||||| Sbjct 1072061 CTTCTTGTACATCTCCCAAATCTCAGGGTACTTGATCGGGAACA 1072104 Score = 147 bits (162), Expect = 3e-29 Identities = 230/324 (71%), Gaps = 5/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||||||| || | ||| ||| ||| |||||||||||| || ||||| || Sbjct 1070973 CCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCCGCGTTTT 1071032 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||||||||| || ||||| ||| ||||| |||||||| || ||| ||||| Sbjct 1071033 TTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAA 1071092 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||||||| || || || ||| | | | | | | | ||||||| | ||||||| Sbjct 1071093 GCGACGAGACGATCCGCGAAA--GAAGAATCACACGAT-TCAATCCACTCGAGCGCCCAC 1071149 Query 794521 TCTGCCTTTTTCCTC-ACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | || |||| | || | || || |||||||| ||||| ||||| | ||||||| Sbjct 1071150 T-TGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTC 1071208 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | | ||| |||| || || || | || || ||| | |||||||| ||||| || Sbjct 1071209 GTCGGAGTCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTCTGAGTGTATGTTCTC 1071268 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 |||||||||||||| || || || Sbjct 1071269 AATGGCGATCTGGAAACCGTAGAA 1071292 >seq2 Length=5918456 Score = 152 bits (168), Expect = 8e-31 Identities = 171/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 || || || ||||||||||| | ||||| |||||||| |||||||| ||| |||| Sbjct 904495 ACCTGAACTTCCTTCATGAACCTACCGGCGAGGTTCTCGAGGACGATGCCATCGGAGGCG 904436 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG--CG-AGACC 796275 ||||| |||||||| |||| | ||||| || |||||||||||| |||| || | | Sbjct 904435 GCGAAGAAGGCGAGCACGTAGGTTATAAAATGGCGCTCGTCGTCGGTGAGGACGCCGGTC 904376 Query 796276 CAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGC 796334 ||||||||| | | ||| | | ||||||||||| |||||||| || || ||||| || Sbjct 904375 CAGTGGACCAAATCCTGCGAC-AAATCGACCTCCTCCGCGGTCCAGAACGACGCCTCCGC 904317 Query 796335 CTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| |||||||||||||| ||| |||| ||| ||||||| Sbjct 904316 CTTCTTGTACATCTCCCAAATCTCAGGGTACTTGATCGGGAACA 904273 Score = 134 bits (148), Expect = 2e-25 Identities = 226/321 (70%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 794344 TCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTG 794403 ||||||||| || | ||| ||| || | |||||||||||| || ||||| || || Sbjct 905388 TCGTCGCGAGAAATTAGTTCATTGGAAATGT-GAGGCCGGGCATAAGCCCGCGTTTTTTC 905330 Query 794404 AGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 794463 ||||||||||| || ||||| ||| ||||| |||||||| || ||| ||||| || Sbjct 905329 AGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAGCG 905270 Query 794464 ACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCT 794523 ||||| || || || ||| | | | | | | | ||||||| | |||||||| | Sbjct 905269 ACGAGACGATCCGCGAAA--GAAGAATCACACGAT-TCAATCCACTCGAGCGCCCACT-T 905214 Query 794524 GCCTTTTTCCTC-ACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGAC 794582 | |||| | || | || || |||||||| ||||| ||||| | |||||||| | Sbjct 905213 GGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCGTC 905154 Query 794583 CGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGAT 794642 | || |||| || || || | || || ||| | |||||||| ||||| || || Sbjct 905153 GGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTCTGAGTGTATGTTCTCAAT 905094 Query 794643 GGCGATCTGGAAGCCATAAAA 794663 |||||||||||| || || || Sbjct 905093 GGCGATCTGGAAACCGTAGAA 905073 >seq27 Length=2003651 Score = 143 bits (158), Expect = 4e-28 Identities = 230/328 (70%), Gaps = 13/328 (4%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||||||| || | |||||| ||| |||||||||||| || || || || Sbjct 1228677 CCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGGGCATAAGACCACGTTTT 1228736 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| |||||||| ||| ||||| |||||||| || ||| ||||| Sbjct 1228737 TTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCAAGCAAAC 1228796 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGC--CCTCTTTGTTGATCCACTTCATCGCCC 794518 ||||||| || || || || | | || | ||| | |||||| || ||||| Sbjct 1228797 GCGACGAGGCGTTCTGCGAATG-----AAGCTTCGTCTGATTCAATCCACCGCAGCGCCC 1228851 Query 794519 ACTCTGCCTTTTTCC---TCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 ||| || ||||| || | || || || ||||| ||||| ||||| | || Sbjct 1228852 ACTGAGC---TTTCCGGGCAACACATGGGACTGTATCGATCGCGCGGAAGAGACGCGACT 1228908 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 ||||| | | ||| |||| || || || | || || ||| | |||||||| |||| Sbjct 1228909 TCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCTGTACATTTCTGAGTGTATGT 1228968 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAA 794663 | ||||| ||||||||||||||||| || Sbjct 1228969 TCTCGATTGCGATCTGGAAGCCATAGAA 1228996 Score = 138 bits (152), Expect = 2e-26 Identities = 193/264 (73%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 || || || ||||||||||| | ||||| |||||||| |||||||||||| |||| Sbjct 1229141 ACCTGTACTTCCTTCATGAATCTACCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCG 1229200 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG--CG-AGACC 796275 ||||| |||||||| || | | ||||| || ||||||||| || |||| || | | Sbjct 1229201 GCGAAGAAGGCGAGCACATAGGTTATAAAATGGCGCTCGTCGGCGGTGAGGACGCCGGTC 1229260 Query 796276 CAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGC 796334 ||||||||| | | ||| | | ||||||||||| || ||||| || || ||||| || Sbjct 1229261 CAGTGGACCAAATCCTGCGAC-AAATCGACCTCCTCCGCCGTCCAGAAAGACGCCTCCGC 1229319 Query 796335 CTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTG 796392 ||| |||||||| |||| || |||| |||| ||| ||||||| | || | | Sbjct 1229320 CTTCTTGTACATTTCCCAAATTTCCG--GGTACTTGATCGGGAACATACAGAACCTGTCC 1229377 Query 796393 GGGTTCTCGCGTAGCAGCGGCTCG 796416 |||||||| |||| |||||| Sbjct 1229378 GGGTTCTCCGCCAGCAAGGGCTCG 1229401 >seq20 Length=2314553 Score = 107 bits (118), Expect = 3e-17 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || || |||||| ||||||| |||||| | | Sbjct 632848 TGAACTTGGTCACGGCCTTAGTTCCCTCAGATACAGCGTGCTTGGCCAGCTCGCCGGGGA 632907 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| |||||||||||||||| | |||||| |||||| || Sbjct 632908 GCACCAACCTCACGGAAGTCTGGATCTCGCGGGAGGTAATCGTGGGCTTCTTGTTGTAGC 632967 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || || | ||| |||| |||||||||| || ||||| Sbjct 632968 GCGCGAGTTTAGATGCTTCCTGGGCGAGTTTCTCGAATATGTCGTTGATGAAGCTGTTCA 633027 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||||| ||| || ||| || | ||| ||||| |||||||| | |||||| Sbjct 633028 TGATGCCCATCGCCTTGCTGCTGATCCCGATGTCAGGGTGGACCTGCTTCAAGACCTTG 633086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916151088393344