Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq143 89.7 4e-13 seq53 89.7 4e-13 seq34 89.7 4e-13 seq300 86.0 5e-12 seq251 86.0 5e-12 seq32 86.0 5e-12 >seq2 Length=5918456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || || || || |||||| |||| ||| || | Sbjct 561461 ATGCAGATTTTCGTCAAGACCCTCACTGGGAAGACTATTACCCTCGAGGTCGAGTCTTCC 561520 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || ||||| || || |||||| | ||| ||||||| Sbjct 561521 GACACTATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCAG 561580 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| ||| || || ||| |||| || | || ||| |||| ||||||||| Sbjct 561581 CAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCTGACTACAAC 561640 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||| || || | ||| ||||| Sbjct 561641 ATCCAGAAGGAATCCACCCTCCACCTGGTG 561670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | || || || || || ||| |||| ||| || | Sbjct 561689 ATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATCACCCTCGAGGTTGAGTCTTCC 561748 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||||||| Sbjct 561749 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 561808 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| ||| || || ||| |||| || | || ||| |||| ||||| ||| Sbjct 561809 CAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCCGACTATAAC 561868 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| || || | ||| ||||| Sbjct 561869 ATCCAAAAGGAATCAACCCTCCACCTGGTG 561898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || || || || |||||| |||| ||| || | Sbjct 561233 ATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACTATTACCCTCGAGGTCGAGTCTTCC 561292 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || |||||| || || || || | || ||| ||| Sbjct 561293 GACACTATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAG 561352 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| || || || ||||| ||||||| | || | || ||||||||| Sbjct 561353 CAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGGACCCTCGCTGACTACAAC 561412 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||| || | ||| ||||| Sbjct 561413 ATTCAGAAGGAGAGCACCCTCCACCTGGTG 561442 >seq143 Length=574977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| |||| ||||| ||||| ||| |||| ||| | Sbjct 166265 ATGCAGATCTTCGTCAAGACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 166206 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || ||||| || || || ||| | ||| |||||| Sbjct 166205 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 166146 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||| ||||||| | || | || || || ||| Sbjct 166145 CAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGATTATAAC 166086 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAgggg 107781 || || ||||| || ||| | ||| | || |||||||| |||||| Sbjct 166085 ATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATT--GAGGGG 166042 >seq53 Length=1478458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || |||||| | ||||| || ||||| ||| |||| ||| ||| Sbjct 997205 ATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGAGAGCTCT 997264 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | |||||| |||||| || || || || | || || || Sbjct 997265 -GACACTATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCA 997323 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||||| |||| || || || ||||| ||||| | || ||| | || || ||||| Sbjct 997324 GCAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCTAGCTGATTACAA 997383 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||||||||| | || ||||| Sbjct 997384 CATCCAGAAGGAGTCTACTCTTCATCTGGTG 997414 >seq34 Length=3699824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || | || || || ||||| ||| | || |||| ||| | Sbjct 904814 ATGCAAATATTTGTAAAGACCCTTACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCG 904755 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || || ||| || ||||||||| | || |||||| Sbjct 904754 -GACACGATCGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCA 904696 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||||||||||| | || | || |||||||| Sbjct 904695 GCAGAGGCTGATATTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAA 904636 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||| ||| | || ||||| Sbjct 904635 CATTCAGAAGGAGAGTACTCTCCATCTGGTG 904605 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CG 107606 ||||| | ||||| || |||||||||||| |||| || || ||||| || |||| || Sbjct 905506 GTTTACAGATGCAGATCTTTGTCAAAACTCTAACCGGGAAGACCATCACTCTCGAGGTCG 905447 Query 107607 GAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 | ||| ||| || ||| | | ||||| ||| || || || || || | || Sbjct 905446 AAAGCTC-CGACACGATCGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATTCCT 905388 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 ||| ||||| || || || | || || |||||| |||| |||| || | || Sbjct 905387 CCGGACCAGCAAAGGCTCATCTTCGCTGGGAAACAGTTGGAAGACGGTCGTACCCTTGCT 905328 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAggggg 107782 || |||||||| || ||||||||||| | ||| ||||| || || | || || || Sbjct 905327 GATTACAACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTTCGCGGTGG 905272 >seq300 Length=293291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | |||||||| || || ||| |||| ||| | Sbjct 11398 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 11339 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | ||||| |||||| ||||| || ||| | || || ||| Sbjct 11338 GATACCATCGACAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCAGACCAG 11279 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||||| ||||| | | || | || ||||||||| Sbjct 11278 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTGCCGACTACAAC 11219 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAgggg 107781 || || |||||||| || | ||| | ||| | || || |||||| Sbjct 11218 ATCCAGAAGGAGTCCACCCTTCACCTTGTGCTAAGGTT--GAGGGG 11175 >seq251 Length=123057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| ||| |||| ||| | Sbjct 98736 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCA 98677 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || ||||| || || || ||| | ||| |||||| Sbjct 98676 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 98617 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||| ||||||||||| | | || | || || |||||| Sbjct 98616 CAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTTGCTGATTACAAC 98557 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || || ||||| || Sbjct 98556 ATCCAGAAAGAGTCCAC 98540 >seq32 Length=1954954 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || || || || || ||| | || ||| || Sbjct 590064 ATGCAAATCTTTGTCAAGACACTCACTGGGAAGACGATCACCTTGGAGGTTGAGTCTTCA 590005 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | ||||| ||||| || || || || | || ||||||| Sbjct 590004 GATACGATTGACAACGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 589945 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || |||||||| || |||| | || | || ||||||||| Sbjct 589944 CAGAGGCTTATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACCCTTGCCGACTACAAC 589885 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || ||||||||||| || | ||| | || |||| Sbjct 589884 ATCCAAAAGGAGTCGACCCTTCACCTTGTTCTGAG 589850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398872444265344