Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq59 109 1e-18 seq8 91.5 3e-13 seq9 86.0 1e-11 >seq59 Length=1347071 Score = 109 bits (120), Expect = 1e-18 Identities = 281/422 (67%), Gaps = 12/422 (3%) Strand=Plus/Minus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || || ||||||||||| || ||||| || ||||| || || | ||||| || |||||| Sbjct 1071100 CTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGTTCTGCGCGATCTTT 1071041 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| || || || || | ||||| || ||| |||| |||||| || | || || | Sbjct 1071040 TGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAATGAACTAATTTCTCGC 1070981 Query 131981 GATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG----ATAA 132036 || |||| | | || ||| || ||| ||| | || || ||||||| | || Sbjct 1070980 GACGAAGGACTTCACTGTGATTTCGCTTGTTTATTGTACAG----TTTGCTGAAGAACAA 1070925 Query 132037 ACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTT 132096 ||| ||| | | ||| | | || ||| ||||| ||||||||| || || Sbjct 1070924 GCTTACCGAAGAACACGTTAGATCGATCGTATCCGACGCAGTGGATATCGAGCGAGAATT 1070865 Query 132097 TAT-TACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAG 132154 || | || | || | || || ||| | || ||||| ||| ||| |||| || Sbjct 1070864 CATCTGCA-ATGCACTCCCGTGTGCGTTGGTCGGAATGAACAGTGA-TCTGATGAGTCAG 1070807 Query 132155 TACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAAC 132214 || || |||||||| |||||||| || || || |||||| ||| ||||||||| Sbjct 1070806 TATATCGAATTCGTAGCTGATCGATTGATCGTTGCTCTCGGATATAGCAAAATTTATAAC 1070747 Query 132215 ACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTC 132274 | || || | |||||||||| |||||| | | || || || || |||||| Sbjct 1070746 GTCGCTAATCCTTTCGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACAAATTTCTTC 1070687 Query 132275 GA 132276 || Sbjct 1070686 GA 1070685 >seq8 Length=3569224 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/207 (72%), Gaps = 12/207 (6%) Strand=Plus/Minus Query 304935 TGCAGGCATCTCAAAGATCTGG-CAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGG- 304992 ||||||| ||||| ||||||| | | || ||||| ||| | ||| | | | |||| Sbjct 2673639 TGCAGGCTACTCAACGATCTGGACGGCCCATTAAATC-TAT-ATGCAGCAGACTTAAGGC 2673582 Query 304993 TAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAG 305052 |||||| || || ||| |||| ||||| ||||| || |||||||| ||| |||| ||| Sbjct 2673581 TAAAGAAGGACGAATTAGAGGCAATCTGATGGGGAAGCGTGTTGACTTTTCTGCACGAAC 2673522 Query 305053 TGTAATCACACCTGATTCTCAA--ATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--A 305108 || || || || || | ||| || | | | | ||||| |||||||| ||| | | Sbjct 2673521 AGTCATTACCCCAGA--CCCAACTATAAATATCGACGAATTGGGAGTTCC--TTGGAGCA 2673466 Query 305109 TTGCTTTAAAACTAACATTTCCAGAGA 305135 |||||||||| | |||| |||||||| Sbjct 2673465 TTGCTTTAAATTTGACATATCCAGAGA 2673439 >seq9 Length=4860633 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 110552 TATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGG 110611 ||||||||| ||||||||| || | || ||| |||| |||| |||| |||| || Sbjct 1349860 TATTGAAGGAATTTATGATACTTTAAAGGAATGTGCTGTTATAAGTAAATCTGCTGGGGG 1349801 Query 110612 AATTGGTATTCACGTTCATGATATTCGCTCAAAAGG-AGCAAATATCGCAACAGCGAAGG 110670 ||||||| || |||||| ||||||| ||| || ||| | ||| | | || | Sbjct 1349800 AATTGGTGTTTCTGTTCATAATATTCGTGCAACTGGTAGCTATATTCGTGGTA-CAAATG 1349742 Query 110671 GTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGA 110730 | |||||| ||| |||| || ||||| | || || ||||||||||| ||| || Sbjct 1349741 GAACTTCAAATGGGATTGTGCCGATGTTGCGGGTGTTTAACGACACTGCCCGATACGTTG 1349682 Query 110731 ATCA---AGGTGGTAAGAGAAATGG 110752 |||| ||| || |||||||| || Sbjct 1349681 ATCAAGGAGGAGGCAAGAGAAAAGG 1349657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186799175389056