Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq34 113 3e-20 seq2 105 4e-18 seq53 104 2e-17 seq300 82.4 5e-11 >seq34 Length=3699824 Score = 113 bits (124), Expect = 3e-20 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 || ||||| | || ||| | ||||| ||| ||||| ||||| || || |||||||| ||| Sbjct 904585 TCCCCACCACGCAGACGAAGCACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCG 904644 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 | || ||||| |||| |||| || || || ||||| |||| | ||||||||| | Sbjct 904645 GCAAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGA 904704 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-T 33697 || | ||||||||||| ||||||| ||| |||| || | ||||| | | | | Sbjct 904705 GGGATGCCTTCTTTGTCCTGAATTTTCGCCTTC-ACATTATCGATCGTGTC-CGAGCTCT 904762 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | ||||| || || || || | || |||||||| || |||||| Sbjct 904763 CCACCTCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTACAAATATTTGCATA 904815 Score = 107 bits (118), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||||| ||| ||||||||||| || || || ||||| |||| || || || | Sbjct 905055 ACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCAAGGGTACGGCC 905114 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| ||||| || || || |||||||||| | |||||| ||| | || | |||||| || Sbjct 905115 GTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTT 905174 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCG 33709 ||| ||| || || | |||| ||| | |||||| ||| || || || | | Sbjct 905175 GTCCTGAATCTT-TGCCTTCACATTGTCAATGGTGTCAGAGCT---CTCGACTTCCAAGG 905230 Query 33710 TGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || | || || || ||||||||||| Sbjct 905231 TGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 905270 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||||||||| || || || ||||| |||| Sbjct 904815 ACCACCGCGGAGACGCAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGC 904874 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| |||||||| || || |||||||||| | |||||| || | || Sbjct 904875 AAGGGTACGGCCGTCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGGGG 904934 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| |||| || | || || || || Sbjct 904935 AATACCTTCCTTGTCCTGAATTTTGGCCTTCACGTTATCGATAGTATCCGAACTCTCAAC 904994 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| |||||||| || || || | || || || |||||||||||| Sbjct 904995 TTCAAGAGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCATA 905043 >seq2 Length=5918456 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || |||||||| || || ||||||||||||| |||||| | |||| || Sbjct 561213 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCG 561154 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || || ||||||| | |||||||||| | || | || || ||||| | Sbjct 561153 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 561094 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || || | ||| | |||||| ||||| || |||| ||||| || || Sbjct 561093 ATCTT-GGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTT 561035 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||||||||| Sbjct 561034 GCCAGTGAGGGTCTTGACAAAGATCTGCAT 561005 >seq53 Length=1478458 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| ||||||||||| || || ||||| ||||| | Sbjct 997888 ACCACCACGGAGACGAAGCACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGC 997829 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||| ||||| |||||||| | | |||||| || | || Sbjct 997828 TAGAGTGCGGCCATCTTCCAGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGGGG 997769 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || |||||| | | |||| || | || || |||| Sbjct 997768 AATACCTTCCTTATCCTGAATTTT-GGCCTTGACATTATCAATTGTATCCGAACTCTCCA 997710 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||| || |||||||||||||| Sbjct 997709 CCTCAAGAGTGATTGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 997661 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| ||| ||||||||||| || || |||||||| || | | Sbjct 998115 CCGCCACGCAGACGAAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCG 998056 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| || | | |||||| || | || Sbjct 998055 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 997996 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| |||||| | || ||||| || | || || ||| || Sbjct 997995 ATCCCTTCCTTGTCCTGAATTTT-AGCTTTAACATTATCGATCGTATCAGAGCT---CTC 997940 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| |||| ||||| || || || || | || || ||||| ||||||||| Sbjct 997939 CACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCATA 997888 >seq300 Length=293291 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| ||||| ||| || || ||||||||||| | Sbjct 10488 CCACCACGGAGACGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 10547 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || ||||||| | ||||||||| | || Sbjct 10548 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAAATCAGCCTCTGCTGATCCGGGGGA 10607 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || || || || | || | || || |||||| || Sbjct 10608 ATTCCCTCCTTGTCCTGAATCTT-TGCTTTGACGTTATCAATTGTATCAGATGATTCAAC 10666 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||| || || || || | || || || |||||||||||| Sbjct 10667 CTCCAGCGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 10715 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| | || ||| | || || ||| ||| || || |||||||| |||| Sbjct 11172 CCTCCCCTCAACCTTAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 11231 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||||| |||||||| |||| | |||||| ||| | || Sbjct 11232 AGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 11291 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || || || || | |||| ||| | ||| || || || || Sbjct 11292 ATGCCCTCCTTATCCTGGATCTT-TGCCTTTACATTGTCGATGGTATCCGAGGACTCGAC 11350 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||||| || ||||| | || || || |||||||||||| Sbjct 11351 CTCGAGGGTGATCGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATA 11399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700410552320