Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq59 147 3e-29 seq2 138 2e-26 seq27 132 7e-25 >seq59 Length=1347071 Score = 147 bits (162), Expect = 3e-29 Identities = 229/322 (71%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| |||||||||||||| || ||||| ||||| |||| ||| || || | Sbjct 1071292 TTCTACGGTTTCCAGATCGCCATTGAGAACATACACTCAGAAATGTACAGTCTTCTATTA 1071233 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || || |||| ||| | | |||||||| | ||||| ||||| |||||||| || Sbjct 1071232 GAAACTTATATCAAAGACTCCGACGAGAAGGCACGTCTCTTCCGCGCGATCGACACTGTC 1071173 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 |||| || || ||| | |||||| | ||||||| | | | | | || | Sbjct 1071172 CCGTGTGTCGCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATTGA-ATCGTGTGATTCTTC 1071114 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 || || || || ||||||| ||||| |||| || |||||||| ||||| ||| | Sbjct 1071113 -TTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGT 1071055 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 ||||||| ||||||||||| || || ||||| || |||||||| | || ||| ||| Sbjct 1071054 TCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGG-CCTCACATTTTCCAAT 1070996 Query 1456290 GAATTTATCAGTCGCGACGAAG 1456311 ||| | || ||||||||||| Sbjct 1070995 GAACTAATTTCTCGCGACGAAG 1070974 Score = 138 bits (152), Expect = 2e-26 Identities = 192/262 (73%), Gaps = 9/262 (3%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||| || ||||| ||| ||| || | | || | ||||||| ||| |||| Sbjct 1072142 CGAACCCTTGCTGGCCGAGAACTCGGATAGGTTCTGCATGTTCCCGATCAAGTACCCTGA 1072083 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| || ||||| ||||| || || |||||||| ||||||||||| Sbjct 1072082 GATTTGGGAGATGTAC-AAGAAGGCGGAGGCGTCGTTCTGGACCGCGGAGGAGGTCGATT 1072024 Query 1455835 TCGGCGCCG-ACACGGTCCACTGG----GTGTCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 | | ||| | | |||||||||| | ||| || | |||||||||||||||||| || Sbjct 1072023 T-GTCGCAGGATTTGGTCCACTGGACCGGCGTC-CTCACCGACGACGAGCGCCATTTTAT 1071966 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | |||| |||||||| || ||||||| |||||||||||| ||||||||| |||| Sbjct 1071965 AACCTACGTGCTCGCCTTCTT-CGCCGCCTCCGATGGCATCGTCCTCGAGAACCTCGCCG 1071907 Query 1455950 GCCGCTTTATGAAAGAGGTCCA 1455971 | | || ||||| || || || Sbjct 1071906 GTAGGTTCATGAAGGAAGTTCA 1071885 >seq2 Length=5918456 Score = 138 bits (152), Expect = 2e-26 Identities = 192/262 (73%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||| || ||||| ||| ||| || | | || | ||||||| ||| |||| Sbjct 904235 CGAACCCTTGCTGGCCGAGAACTCGGATAGGTTCTGCATGTTCCCGATCAAGTACCCTGA 904294 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| || ||||| ||||| || || |||||||| ||||||||||| Sbjct 904295 GATTTGGGAGATGTAC-AAGAAGGCGGAGGCGTCGTTCTGGACCGCGGAGGAGGTCGATT 904353 Query 1455835 TCGGCGCCG-ACACGGTCCACTGG----GTGTCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 | | ||| | | |||||||||| | ||| || | |||||||||||||||||| || Sbjct 904354 T-GTCGCAGGATTTGGTCCACTGGACCGGCGTC-CTCACCGACGACGAGCGCCATTTTAT 904411 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | |||| |||||||| || ||||||| |||||||||||| ||||||||| |||| Sbjct 904412 AACCTACGTGCTCGCCTTCTT-CGCCGCCTCCGATGGCATCGTCCTCGAGAACCTCGCCG 904470 Query 1455950 GCCGCTTTATGAAAGAGGTCCA 1455971 | | || ||||| || || || Sbjct 904471 GTAGGTTCATGAAGGAAGTTCA 904492 Score = 138 bits (152), Expect = 2e-26 Identities = 231/329 (70%), Gaps = 5/329 (2%) Strand=Plus/Plus Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| |||||||||||||| || ||||| ||||| |||| ||| || || | Sbjct 905073 TTCTACGGTTTCCAGATCGCCATTGAGAACATACACTCAGAAATGTACAGTCTTCTATTA 905132 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || || |||| || | | |||||||| | ||||| ||||| |||||||| || Sbjct 905133 GAAACTTATATCAAAGATTCCGACGAGAAGGCACGTCTCTTCCGCGCGATCGACACTGTC 905192 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 |||| || || ||| | |||||| | ||||||| | | | | | || | Sbjct 905193 CCGTGTGTCGCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATTGA-ATCGTGTGATTCTTC 905251 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 || || || || ||||||| ||||| |||| || |||||||| ||||| ||| | Sbjct 905252 -TTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGT 905310 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 ||||||| ||||||||||| || || ||||| || |||||||| || | || ||| Sbjct 905311 TCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCT--CACATTTCCAAT 905368 Query 1456290 GAATTTATCAGTCGCGACGAAGTTTTCAC 1456318 ||| | || ||||||||| | ||||| Sbjct 905369 GAACTAATTTCTCGCGACGAGGACTTCAC 905397 >seq27 Length=2003651 Score = 132 bits (146), Expect = 7e-25 Identities = 193/263 (73%), Gaps = 11/263 (4%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 |||||| ||||| || |||||| || | || ||| ||||||| ||| |||| | Sbjct 1229401 CGAGCCCTTGCTGGCGGAGAACCCGGACAGGTTCTGTA-TGTTCCCGATCAAGTACCCGG 1229343 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 || |||||||||||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 1229342 AAATTTGGGAAATGTAC-AAGAAGGCGGAGGCGTCTTTCTGGACGGCGGAGGAGGTCGA- 1229285 Query 1455834 CTCGGCGC-CGACACGGTCCACTG----GGTGTCGCTGAGCGACGACGAGCGCCATTTCA 1455888 | | ||| || ||||||||| || ||| || | || ||||||||||||||| | Sbjct 1229284 TTTGTCGCAGGATTTGGTCCACTGGACCGGCGTC-CTCACCGCCGACGAGCGCCATTTTA 1229226 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 | | | || |||||| || ||||||||| ||| |||||||| ||||||||| ||| Sbjct 1229225 TAACCTATGTGCTCGCC-TTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCC 1229167 Query 1455949 GGCCGCTTTATGAAAGAGGTCCA 1455971 || | || ||||| || || || Sbjct 1229166 GGTAGATTCATGAAGGAAGTACA 1229144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177724779153152