Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq321 428 5e-115 seq8 93.3 5e-14 >seq321 Length=132638 Score = 428 bits (474), Expect = 5e-115 Identities = 475/632 (75%), Gaps = 1/632 (0%) Strand=Plus/Minus Query 178030 TCATC-TCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 178088 ||||| |||||||| || |||| |||| || || ||| | || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 178089 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 178148 |||||||| ||||| ||||||||||| | || || || ||||||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 178149 TTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGT 178208 | |||||| | ||||| | | |||||||| ||||||||||||||| | |||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 178209 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCA 178268 | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 178269 GTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATC 178328 || ||| || |||| ||| |||||||||| |||||||| | ||||| | || || Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 178329 TCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCC 178388 || ||||| ||||||| |||| |||| ||||| || || |||||||| || ||||| || Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 178389 TTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 178448 ||||||||||| || || || ||||||||||| ||||| || |||||||| ||||| ||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 178449 TCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGT 178508 || ||||| || ||| | | | ||||| || |||| ||||| || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 178509 TATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGT 178568 || | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || || Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 178569 CGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCA 178628 || |||||||||||||||||| ||||||||||| ||||| || |||||||| | || Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 178629 GCATGGCCTGTAGTTGGAATCTGGTTCACCGC 178660 || ||||||||||| || ||||||||||| || Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 >seq8 Length=3569224 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/231 (70%), Gaps = 16/231 (7%) Strand=Plus/Plus Query 178380 ATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCA 178439 ||||| || ||||||||||| || || || ||||||| || || |||||||| Sbjct 2145667 ATGCATCCATTCCACATGTTAGGAGTAGCTAATGTATTC------TCCCTATTCAGTGCT 2145720 Query 178440 ATGCACGGTTCTTTGGTTACATCTTCACTCGT-TCGTGAAAC-GACTGAAACAGAATCAC 178497 ||||| | || ||||| || ||| | | | || |||| ||| |||| ||||| Sbjct 2145721 ATGCATGATTTCTTGGTAACCTCT--AGTTTTATCAAGAAAATGACAGAAAATGAATCTG 2145778 Query 178498 AGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCAC--- 178554 || | ||||||| || || ||||| ||||| || ||||| ||||| || || | Sbjct 2145779 CTAATGAAGGTTATAGATTTGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCTGC 2145838 Query 178555 --ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTC 178603 |||| | ||| | || |||||||| ||||||||| ||||||||||| Sbjct 2145839 TCATGGTTG-TTCAGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTC 2145888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606002812692480