Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq321 392 4e-104 >seq321 Length=132638 Score = 392 bits (434), Expect = 4e-104 Identities = 469/633 (74%), Gaps = 3/633 (0%) Strand=Plus/Minus Query 158560 TCATC-TCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 158618 ||||| |||||||| || | || |||| || || ||| | || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 158619 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 158678 |||||||| ||||| ||||||||||| | || || || ||||||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 158679 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCGC 158738 | |||||| | | || | | || ||||| ||||| ||||||||| | ||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 158739 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCT 158798 | |||||||| || ||||| ||| |||||||| || || || || || || ||||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 158799 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158858 || ||| | |||| ||| |||||||||| ||| || |||| ||||||| | || || Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 158859 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 158918 || |||||||| |||| |||| |||||||||| || || ||||||||||||||||| || Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 158919 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 158978 ||||| ||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 158979 AGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGG 159037 | || || | || | | || | ||||| || |||| || || || | || Sbjct 86632 TCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGG 86574 Query 159038 TTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGG 159097 ||||| ||||| ||||| |||||||| || |||||||| || || |||||||| || || Sbjct 86573 TTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGG 86514 Query 159098 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 159157 || |||||||||||||| ||| ||||||||||| |||||| | |||||||| | || Sbjct 86513 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGC 86454 Query 159158 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 159190 ||| |||||||| || || ||||||||||| || Sbjct 86453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552467412295680