Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq27 140 4e-28 seq59 132 7e-26 seq2 131 2e-25 seq9 98.7 1e-15 >seq27 Length=2003651 Score = 140 bits (154), Expect = 4e-28 Identities = 248/359 (69%), Gaps = 7/359 (2%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 ||| || ||||| || || || || || || || | | ||||| |||||| |||||||| Sbjct 1228652 TAAACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGT 1228711 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| || ||||| |||||||| ||||| ||||| || || ||| || || || || || Sbjct 1228712 GAGGCCGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAA 1228771 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC----GTAACTT-GTATCA 39787 ||||||||||||||| ||||| || || || | ||| | | | ||| || | | Sbjct 1228772 GAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGA 1228831 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | | |||||| | | ||||| | ||||||| ||||| || | ||| || || Sbjct 1228832 T--TCAATCCACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATC 1228889 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || |||||| || || || ||||| | |||||| || | || || || Sbjct 1228890 GCGCGGAAGAGACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCTG 1228949 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 ||||||||||| || ||||| || || || ||||| || || || || |||||||| Sbjct 1228950 TACATTTCTGAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAATGCCCTTGCTTC 1229008 >seq59 Length=1347071 Score = 132 bits (146), Expect = 7e-26 Identities = 416/637 (65%), Gaps = 13/637 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || || || | |||||||| ||||| || || || | ||| || || Sbjct 1070661 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 1070720 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| |||| || ||||||| | ||||| |||| || |||| | | ||| Sbjct 1070721 TCCATCCAATCGAAAGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 1070780 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||| ||| || || ||||| || || |||||| |||| |||||||| | | Sbjct 1070781 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCAAC 1070840 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || || || | | || ||| ||||| || || || || | || ||| Sbjct 1070841 GCACACGGGAGTGCATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGATC 1070900 Query 39566 GATGTTACTACCTCATCACTCGG--TGGA-TGCAATAAA-TGTTTAAACATTAAGCAGGC 39621 ||| | || || || | | || | || ||| ||| ||| ||| || || Sbjct 1070901 GATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACAAGC 1070956 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||| ||||| || || || || || | | ||||| ||| || ||||||||||| || || Sbjct 1070957 GAAATCACAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGG 1071016 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGC 39740 ||| || || || ||||| |||||||| || || ||| || || || || |||||||||| Sbjct 1071017 CATAAGCCCGCGTTTTTTCAGCCAAAAGATCGC-GCAGAACGAGCCGGAGAAGAAGATGC 1071075 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA---TTATGTATCC 39797 |||| || ||||| || || || | || || || | |||| | |||| Sbjct 1071076 CTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGATTCAATCC 1071135 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 ||| | ||||| | ||||| ||||| || | || || || || |||| Sbjct 1071136 ACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGA 1071195 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 || || || || ||||| | ||| || |||| || ||||| |||||||||| Sbjct 1071196 GACGTGCCTTCTCGTCGGAGTCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTCTG 1071255 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 | || ||||| ||||| || ||||| || ||||| || Sbjct 1071256 AGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 1071292 >seq2 Length=5918456 Score = 131 bits (144), Expect = 2e-25 Identities = 418/637 (66%), Gaps = 16/637 (3%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || || || | |||||||| ||||| || || || | ||| || || Sbjct 905701 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 905642 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||||| | ||||| |||| || |||| | | ||| Sbjct 905641 TCCATCCAATCAAACGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 905582 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||| ||| || || ||||| || || |||||| |||| |||||||| | | Sbjct 905581 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCAAC 905522 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || || || | | || ||| ||||| || || || || | || ||| Sbjct 905521 GCACACGG-AGTGCATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGATC 905463 Query 39566 GATGTTACTACCTCATCACTCGG--TGGA-TGCAATAAA-TGTTTAAACATTAAGCAGGC 39621 ||| | || || || | | || | || ||| ||| ||| ||| || || Sbjct 905462 GATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACAAGC 905407 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||| ||||| || || || || || | | ||||| ||| || |||| |||||| || || Sbjct 905406 GAAATCACAGTGAAGTCC-TCGTCGCGAGAAATTAGTTCATTGGAAA-TGTGAGGCCGGG 905349 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAAGATGC 39740 ||| || || || ||||| |||||||| || || ||| || || || || |||||||||| Sbjct 905348 CATAAGCCCGCGTTTTTTCAGCCAAAAGATCGC-GCAGAACGAGCCGGAGAAGAAGATGC 905290 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA---TTATGTATCC 39797 |||| || ||||| || || || | || || || | |||| | |||| Sbjct 905289 CTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGATTCAATCC 905230 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 ||| | ||||| | ||||| ||||| || | || || || || |||| Sbjct 905229 ACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGA 905170 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 || || || || |||||| | ||| || |||| || ||||| |||||||||| Sbjct 905169 GACGTGCCTTCTCGTCGGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTCTG 905110 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 | || ||||| ||||| || ||||| || ||||| || Sbjct 905109 AGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 905073 >seq9 Length=4860633 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || || || ||| ||||||| || |||||||||||| | ||||||| ||||| ||| Sbjct 1347151 AAAACCCTGCGACTGTAAATGTTCGAGGTATATGGTTCAAAGCATTCATTGTTTCCTAGA 1347210 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 || ||| ||||| ||||| ||||| || || |||| | | || || | |||| | Sbjct 1347211 ATCTGACTTGTTGAAGCAGTAGGCATTGGAGCAACCAGAAGAGAGTTCCTTACTCCAT-T 1347269 Query 68854 GTTA-TGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912 ||| || | ||| | | || ||||||||||| ||||| ||||| | |||||||| Sbjct 1347270 CTTAGAAATCATTTCTCTCAAATCCTTCCAATCCCATAGATCTGATGGAATCACATTCCA 1347329 Query 68913 AAGATCGTATTGTAGAATTCC 68933 | ||| |||||||| ||| Sbjct 1347330 CATATCAGGTTGTAGAACTCC 1347350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901106621440