Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq27 138 9e-28 seq59 131 1e-25 seq2 123 2e-23 >seq27 Length=2003651 Score = 138 bits (152), Expect = 9e-28 Identities = 252/366 (69%), Gaps = 5/366 (1%) Strand=Plus/Minus Query 43926 TACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAA 43985 || |||||||| | || ||||| || || || || || || || || || || |||| Sbjct 1229013 TAGCAGAAGCAAGGGCATTCTATGGCTTCCAGATCGCAATCGAGAACATACACTCAGAAA 1228954 Query 43986 TGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTA 44045 ||||||| ||||| | || || || |||||||| |||||||| || | || Sbjct 1228953 TGTACAGCCTTCTATTGGAAACATATATCAAAGACTCCGACGAGAAGTCGCGTCTCTTCC 1228894 Query 44046 ATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA 44104 ||||| || ||||| || || | || | ||||| | ||||| || ||||| Sbjct 1228893 GCGCGATCGATACAGTCCCATGTG-TTGCCCGGAAAGCTCAGTGGGCGCTGCGGTGGATT 1228835 Query 44105 AATTCAAATGA---TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATT 44161 | ||| | || ||| || | |||||| || ||||||||||| || |||||||| Sbjct 1228834 GAATCAGACGAAGCTTCATTCGCAGAACGCCTCGTCGCGTTTGCTTGCGTAGAAGGCATC 1228775 Query 44162 TTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 ||||| || || ||||| || || || ||| | || ||||| ||| | ||||| || Sbjct 1228774 TTCTTCTCCGGCTCGTTCTGTGCGATCTTCTGGCTGAAAAAACGTGGTCTTATGCCCGGC 1228715 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | || |||||||| || |||| ||| || ||||| | || |||||||| ||||| Sbjct 1228714 CTCACATTTTCAAACGAACTAATTTCTCGCGACGAAGGACTTCACTGCGATTTCGCTTGT 1228655 Query 44282 TTGTTA 44287 || ||| Sbjct 1228654 TTATTA 1228649 >seq59 Length=1347071 Score = 131 bits (144), Expect = 1e-25 Identities = 242/349 (69%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| || || || || || ||||||||||||||||| || Sbjct 1071292 TTCTACGGTTTCCAGATCGCCATTGAGAACATACACTCAGAAATGTACAGTCTTCTATTA 1071233 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || || |||||||| |||||||| || | || ||||| || || || Sbjct 1071232 GAAACTTATATCAAAGACTCCGACGAGAAGGCACGTCTCTTCCGCGCGATCGACACTGTC 1071173 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 || || | | | |||||| | ||||| || | ||||| | || |||||||| Sbjct 1071172 CCGTGTG-TCGCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATTGAATCGTGTGATTCTTC 1071114 Query 44122 T---GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 | | || || || ||||| ||||| ||||||||||| ||||| || || ||||| Sbjct 1071113 TTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGTT 1071054 Query 44179 -TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 ||| || || |||||| | || ||||| || | ||||| || | || ||||| |||| Sbjct 1071053 CTGC-GCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAATG 1070995 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 | |||| ||| || ||||| | || || ||||| ||||| || || Sbjct 1070994 AACTAATTTCTCGCGACGAAGGACTTCACTGTGATTTCGCTTGTTTATT 1070946 >seq2 Length=5918456 Score = 123 bits (136), Expect = 2e-23 Identities = 242/349 (69%), Gaps = 9/349 (3%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| || || || || || ||||||||||||||||| || Sbjct 905073 TTCTACGGTTTCCAGATCGCCATTGAGAACATACACTCAGAAATGTACAGTCTTCTATTA 905132 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || || ||||||||| |||||||| || | || ||||| || || || Sbjct 905133 GAAACTTATATCAAAGATTCCGACGAGAAGGCACGTCTCTTCCGCGCGATCGACACTGTC 905192 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA---TTC 44118 || || | | | |||||| | ||||| || | ||||| | || ||| ||| Sbjct 905193 CCGTGTG-TCGCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATTGAATCGTGTGATTCTTC 905251 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||| | || || || ||||| ||||| ||||||||||| ||||| || || ||||| Sbjct 905252 TTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGTT 905311 Query 44179 -TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 ||| || || |||||| | || ||||| || | ||||| || | || |||| |||| Sbjct 905312 CTGC-GCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCAC-ATTTCCAATG 905369 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 | |||| ||| || || | ||| || || ||||| ||||| || || Sbjct 905370 AACTAATTTCTCGCGACGAGGACTT-CACTGTGATTTCGCTTGTTTATT 905417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451659780480