Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq32 109 5e-19 seq251 98.7 8e-16 seq143 93.3 4e-14 seq300 86.0 5e-12 seq53 84.2 2e-11 >seq32 Length=1954954 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || ||||| || ||||| ||||| ||| | | |||| | || || Sbjct 589628 ACCAAATGCAGGGTGGACTCTTTCTGGATATTATAGTCCGCT-AGGGTGCGGCCATCCTC 589686 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | ||||| | ||| || ||||| || | ||||| || || Sbjct 589687 CAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 589746 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | |||| |||||||| || || || || ||||| || | || Sbjct 589747 GATCTTTGCCTTCACATTGTCTATAGTGTCTGAGGACTCCACCTCCAGAGTGATCGTCTT 589806 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 |||||| || || || ||||||||||||||| || Sbjct 589807 GCCCGTGAGTGTCTTAACAAAGATTTGCATACCT 589840 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| | | | || ||||||| |||||||| ||| Sbjct 589868 GTCGACTCCTTTTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGTTTGCCG 589927 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| |||||||| || | |||||| || || |||||| || Sbjct 589928 GCAAAGATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTT 589987 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || |||| | ||||| || | || || | || || || || || Sbjct 589988 ACGTTGTCAATCGTATCTGAAGACTCAACCTCCAAGGTGATCGTCTTCCCAGTGAGTGTC 590047 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 590048 TTGACAAAGATTTGCAT 590064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || || || || | || | || || || || || || ||||| ||| Sbjct 590064 TGCCTCCCCTCAGCCTCAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGG 590123 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| |||||||| || |||||| | || || | ||| |||||||| | Sbjct 590124 CAAGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAG 590183 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| || | | | || | ||||||| | |||| Sbjct 590184 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATCGTGTCTGATGACTCAA 590243 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || || || || || |||||||||||||| Sbjct 590244 CCTCGAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACAAAGATTTGCAT 590292 >seq251 Length=123057 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | ||||| || || ||||||||||| || | | |||| |||||||| Sbjct 98300 ACCAGATGCAGAGTAGACTCCTTCTGAATATTGTAATCTGCAAGGGTGCGGCCGTCTTCG 98359 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| ||||| |||||||| || | ||||| ||||| | Sbjct 98360 AGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGG 98419 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | || | ||| || | | ||||| || || || || | || Sbjct 98420 ATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCAACCTCGAGGGTGATTGTCTTC 98479 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| ||||| ||||| Sbjct 98480 CCGGTGAGGGTCTTCACGAAGATCTGCAT 98508 >seq143 Length=574977 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | ||||| || || || |||||||| || | | |||| |||||||| Sbjct 165601 ACCAGATGCAGAGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTGCGGCCGTCTTCG 165660 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| ||||| |||||||| || | ||||| ||||| | Sbjct 165661 AGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGG 165720 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | || | ||| || | | || || || || || || | || Sbjct 165721 ATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCGACCTCGAGGGTGATCGTCTTC 165780 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 165781 CCAGTGAGGGTCTTCACAAAGATCTGCAT 165809 >seq300 Length=293291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | ||||| || || || || ||||| || | | |||| |||||||| Sbjct 10506 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGGCCGTCTTCG 10565 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| |||| || | ||| |||||||| || | ||||| || || Sbjct 10566 AGCTGCTTGCCCGCGAAAATCAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGA 10625 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | | || | || || | | |||||| || || || || | ||| Sbjct 10626 ATCTTTGCTTTGACGTTATCAATTGTATCAGATGATTCAACCTCCAGCGTGATTGTCTTG 10685 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || ||||| |||||| Sbjct 10686 CCGGTGAGGGTCTTGACGAAGATCTGCATA 10715 >seq53 Length=1478458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || ||||| | || | |||| ||| | ||||| || || || || ||||| || ||| Sbjct 997431 CCACCGCGAAGTCGTAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 997372 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || | || |||||||| || |||||| ||||||| | || || || || || Sbjct 997371 AGGGTTCTGC-CATCCTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGGAGG 997313 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||| ||| | | || | |||||| | | || || Sbjct 997312 AATTCCCTCCTTGTCCTGAATCTTAGCTTTTACATTGTCAATAGTGTCAGAGCTCTCGAC 997253 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || |||||||||||||| ||||||||||| Sbjct 997252 CTCGAGGGTGATGGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCAT 997205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929759716352