Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq27 104 3e-17 seq4 104 3e-17 seq59 100 4e-16 seq2 95.1 2e-14 seq8 91.5 2e-13 >seq27 Length=2003651 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 1228670 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGGGCATAAGACC 1228729 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || || |||| ||| | || || ||||| || |||||||||||||| || || || || Sbjct 1228730 ACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCA 1228789 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 |||||||| | |||||||| ||||| || Sbjct 1228790 AGCAAACGCGACGAGGCGTTCTGCGAATGA 1228819 >seq4 Length=5414181 Score = 104 bits (114), Expect = 3e-17 Identities = 301/459 (66%), Gaps = 6/459 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | || ||||| || ||||| || | | || || | || ||| Sbjct 2885493 TCAAGAATGTCAGCACGGTTAGTAGCTGCAATTACTATGACACCCGTATTTCCTTCGAAG 2885552 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | |||||||| || ||||| || ||||||||| || | | Sbjct 2885553 CCATCCATTTCAGTCAAAAGTTGATTAAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 2885610 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | || || | | ||| | || || |||||||||||||||| || ||||| || | Sbjct 2885611 CGATCCCTGCTCCTCTTTGTCTTCCAACAGCATCAATCTCATCAACAAACACAATGCAGG 2885670 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | ||| ||||| ||||| | ||||||||||| |||| Sbjct 2885671 GGGCATTCTCCTTGGCTTTCTTAAAAAGATCACGAACTCGCGATGCACCCACACCGACAA 2885730 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 |||| || ||||| | | | || | || || || ||| | || || |||| Sbjct 2885731 ACATTTCTACAAATTCAGAACCTGAAATCGAGAAAAAGGGAACACCGGCCTCGCCGGCGA 2885790 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| || | |||||| || ||||| || || ||||| | ||| | Sbjct 2885791 TTGCCTTGGCAAGCAAGGTCTTCCCAGTACCCGGAGGGCCTATAAGAAGAACACCTTTCG 2885850 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA-TCTCT 11899 ||||| |||||| | || | ||||| |||| ||| | || ||||||| | | Sbjct 2885851 GGATCCGTGCACCAACTGCAGTGAACCTCTCTGGTTTCTTCAAGAACTCCACAACTTCCA 2885910 Query 11900 TCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 | |||| | |||| || |||||| || | |||||| Sbjct 2885911 TGAAGTCCTGCTTT-GCTTCGTCAACTCCAGCTACATCA 2885948 >seq59 Length=1347071 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || || || ||||| |||||||| || || || || ||||| || || Sbjct 1070966 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCC 1071025 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || || |||| |||| | || |||||||| || |||||||||||||| || ||||| || Sbjct 1071026 GCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCA 1071085 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| || | || || || ||||| || Sbjct 1071086 AGCAAAAGCGACGAGACGATCCGCGAAAGA 1071115 >seq2 Length=5918456 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| || || ||||| |||||||| || | | || || ||||| || || || || | Sbjct 905390 CCTCGTCGCGAGAAATTAGTTCATTGGAAATGTG-AGGCCGGGCATAAGCCCGCGTTTTT 905332 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 ||| |||| | || |||||||| || |||||||||||||| || ||||| || ||||| | Sbjct 905331 TCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAG 905272 Query 122798 CAAAAAGGCGTTCGGCGAAGGA 122819 | | || || || ||||| || Sbjct 905271 CGACGAGACGATCCGCGAAAGA 905250 >seq8 Length=3569224 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 11498 CGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTG 11557 || ||||| || ||||| || | ||||| || | |||||||||||||| || || Sbjct 616332 CGGTTAGTAGCTGCAATTACTATGATGCCCGTATTTCCTTCAAAGCCATCCATTTCAGTC 616391 Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGC 11615 | | |||||||| || ||||| | ||||||||| || | | | | || | | | Sbjct 616392 AAAAGTTGATTAAGGGTCTGTTCCCGTTCATCATTTCCT--CCTCCAATCCCCGTTCCTC 616449 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 ||| | || || ||||| |||||||||| ||| ||||| || || || || || Sbjct 616450 TTTGTCTTCCAACAGCATCGATCTCATCAACGAACACAATGCACGGGGCGTTCTCCTTGG 616509 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 | | | || ||||| ||||| | ||||||||||| |||||||| || ||||| Sbjct 616510 CCTTCTTGAAAAGATCACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAA 616567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024966041600